Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NYR95_RS20780 Genome accession   NZ_CP103837
Coordinates   4745234..4746757 (+) Length   507 a.a.
NCBI ID   WP_316688995.1    Uniprot ID   -
Organism   Xanthomonas dyei strain 22-321     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4740234..4751757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR95_RS20755 (NYR95_20750) - 4740852..4741508 (+) 657 WP_316688988.1 RIO1 family regulatory kinase/ATPase -
  NYR95_RS20765 (NYR95_20760) - 4741675..4743645 (-) 1971 WP_316688991.1 beta-N-acetylglucosaminidase domain-containing protein -
  NYR95_RS20770 (NYR95_20765) - 4744407..4744781 (-) 375 WP_280523185.1 P-II family nitrogen regulator -
  NYR95_RS20775 (NYR95_20770) - 4744934..4745218 (+) 285 WP_104614848.1 accessory factor UbiK family protein -
  NYR95_RS20780 (NYR95_20775) comM 4745234..4746757 (+) 1524 WP_316688995.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NYR95_RS20790 (NYR95_20785) - 4747260..4747769 (+) 510 WP_170068546.1 lipocalin family protein -
  NYR95_RS20800 (NYR95_20795) - 4748333..4748509 (-) 177 WP_005989247.1 hypothetical protein -
  NYR95_RS20805 (NYR95_20800) - 4748890..4750476 (+) 1587 WP_316688997.1 EAL domain-containing protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 53989.75 Da        Isoelectric Point: 8.5261

>NTDB_id=725873 NYR95_RS20780 WP_316688995.1 4745234..4746757(+) (comM) [Xanthomonas dyei strain 22-321]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKDGGR
FDLPIALGILAASGQIDRQALADYEFIGELALTGELRGVDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVQAFTARTL
LEVCAALNGTQQAPTAELAVAAVGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGLVTISRAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVEVPRLPPQALRSGN
LGEDSASVRARVVAARQRQLVRGALPNAQLDQPDTDRHCRLHNDDQLLLERAIEHLQLSARSMHRILRVARTIADLDDSA
TIATRHLTEAIGYRKLDRALTAASAAS

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=725873 NYR95_RS20780 WP_316688995.1 4745234..4746757(+) (comM) [Xanthomonas dyei strain 22-321]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGGGTGCACGCGCCTGAAGTTCGGGTGGAAGTGCATCTTTCCGG
CGGCCTTCCCTCCACCCAGATCGTGGGCCTGCCCGAGGCGGCGGTGCGCGAATCGCGCGAGCGCGTGCGTGCCGCCTTGC
TGTGCGCACAGTTCGAATTCCCGGCCCGGCGCATCACCATCAATCTGGCGCCGGCGGATCTGCCCAAGGACGGCGGCCGC
TTCGATCTGCCGATCGCGCTCGGCATTCTGGCTGCCAGTGGGCAGATCGACCGGCAGGCGCTGGCCGATTACGAATTCAT
CGGCGAGCTTGCGCTGACCGGCGAGTTGCGCGGCGTCGATGGCGTACTGCCGGCCGCCCTGGCCGCCGCGCAGGCCGGGC
GACGGCTCATCGTGCCGCTGGCCAACGGCGCCGAGGCCGCCATTGCCGGGCACGTCCAGGCCTTCACTGCACGCACGTTG
CTGGAAGTCTGCGCCGCCCTCAATGGCACCCAGCAGGCGCCTACTGCCGAACTGGCGGTGGCAGCCGTGGGCGCGCGCGC
GCTACCCGACATGGCCGACGTGCGTGGCCAACCGCACGCACGTCGCGCACTGGAGATCGCCGCAGCCGGTGGCCATCACC
TGCTGCTGGTCGGCAGCCCCGGCTGCGGCAAGACGCTGCTCGCCTCGCGCCTGCCCGGTCTGCTGCCGGAAGCCAGCGAA
GCCGAAGCCCTGGAAACCGCCGCCATTACCTCCATCAGCGGCCGCGGACTGGACCTTGCCCGCTGGCGGCAGCGTCCCTA
CCGCGCCCCGCATCACACCGCCAGCGCCGTCGCCCTGGTCGGCGGCGGCACGCATCCGCGCCCCGGGGAAATCTCGCTGG
CCCATAACGGCGTGCTGTTTCTGGATGAACTCCCTGAGTGGCAACGTCAGACCCTGGAAGTGCTGCGCGAGCCCCTGGAA
TCGGGCTTGGTCACGATCTCACGGGCAGCGCGCAGCGTGGATTTCCCGGCACGGTTTCAGCTGGTGGCGGCCATGAACCC
ATGTCCCTGCGGGTGGGCCGGCGATGGCAGCGGGCGGTGCCGCTGCAGCAGCGACAGCATCCGCCGCTATCGCAGCCGCA
TCTCAGGGCCGCTGCTGGACCGCATCGACCTGCATGTCGAAGTACCGCGTCTGCCGCCGCAAGCATTGCGCAGCGGCAAC
CTCGGCGAGGACAGCGCCAGCGTGCGTGCGCGTGTGGTCGCCGCGCGGCAGCGCCAGCTCGTGCGCGGGGCGTTGCCTAA
TGCGCAACTCGACCAACCCGACACCGATCGCCATTGCCGGCTGCACAACGACGACCAACTGCTGCTGGAACGTGCGATCG
AACATCTGCAGCTATCCGCGCGCTCGATGCATCGCATCCTGCGCGTGGCGCGCACCATTGCCGATCTGGACGACAGCGCC
ACGATTGCCACACGGCACCTGACCGAAGCGATCGGCTATCGCAAGCTGGATCGCGCACTGACCGCCGCCAGTGCGGCATC
GTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.496

100

0.566
  comM Haemophilus influenzae Rd KW20

54.99

100

0.554
  comM Glaesserella parasuis strain SC1401

54.743

99.803

0.546
  comM Vibrio campbellii strain DS40M4

54.15

99.803

0.54
  comM Legionella pneumophila str. Paris

52.495

98.817

0.519
  comM Legionella pneumophila strain ERS1305867

52.495

98.817

0.519
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.85

99.803

0.458