Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NYR97_RS10580 Genome accession   NZ_CP103836
Coordinates   2549252..2550772 (-) Length   506 a.a.
NCBI ID   WP_316697871.1    Uniprot ID   A0AAU0BIN1
Organism   Xanthomonas hydrangeae strain 22-323     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2544252..2555772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR97_RS10560 (NYR97_10530) - 2544631..2545755 (+) 1125 WP_006449002.1 acyl-CoA desaturase -
  NYR97_RS10565 (NYR97_10535) - 2546005..2547567 (-) 1563 WP_205392789.1 EAL domain-containing protein -
  NYR97_RS10570 (NYR97_10540) - 2547952..2548128 (+) 177 WP_006449000.1 hypothetical protein -
  NYR97_RS10575 (NYR97_10545) - 2548653..2549162 (-) 510 WP_316697869.1 lipocalin family protein -
  NYR97_RS10580 (NYR97_10550) comM 2549252..2550772 (-) 1521 WP_316697871.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NYR97_RS10585 (NYR97_10555) - 2550789..2551067 (-) 279 WP_184406361.1 accessory factor UbiK family protein -
  NYR97_RS10590 (NYR97_10560) - 2551220..2551594 (+) 375 WP_197970279.1 P-II family nitrogen regulator -
  NYR97_RS10595 (NYR97_10565) - 2552016..2553989 (+) 1974 WP_316697873.1 beta-N-acetylglucosaminidase domain-containing protein -
  NYR97_RS10600 (NYR97_10570) - 2554193..2554876 (-) 684 WP_316697875.1 RIO1 family regulatory kinase/ATPase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53836.64 Da        Isoelectric Point: 8.1563

>NTDB_id=725847 NYR97_RS10580 WP_316697871.1 2549252..2550772(-) (comM) [Xanthomonas hydrangeae strain 22-323]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDLQALAEYEFLGELALTGELRGVDGVLPAALAAAQASRRLIVPLANGAEAAIAGHVEAFTARTL
LEVCATLNGTQKAPAAELAVQALGVRALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETAAITSISGRGLDLVRWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGLVTISRAARSVDFPARFQLVAAMNPCPCGWAGDSSGRCRCSSDTIGRYRSRISGPLLDRIDLHVEVPRLPPQALRSGN
VGEDSASVRTRVVAARARQLARAGVPNAQLDQAQTDHHCRLQNDDQLLLERAIEHLQLSARSMHRILRVARTIADLDDSA
VIATRHLTEAIGYRKLDRAVGTASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=725847 NYR97_RS10580 WP_316697871.1 2549252..2550772(-) (comM) [Xanthomonas hydrangeae strain 22-323]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGGGTGCATGCGCCTGAGGTTCGGGTGGAAGTGCATCTCTCCGG
CGGTCTTCCCTCCACCCAGATCGTGGGCCTGCCCGAGGCGGCAGTGCGCGAATCGCGCGAACGCGTGCGTGCCGCACTGC
TGTGCGCACAGTTCGAATTCCCGGCACGGCGCATCACGATCAATCTGGCGCCGGCCGATTTGCCCAAGGAAGGCGGCCGC
TTCGACCTGCCGATCGCCCTCGGCATTCTGGCCGCCAGCGGTCAGATCGACCTGCAAGCCTTGGCCGAGTACGAATTTCT
CGGCGAACTCGCCCTGACCGGCGAGTTGCGCGGTGTCGATGGCGTGCTGCCCGCCGCCCTGGCAGCAGCGCAGGCCAGCC
GCCGCCTGATCGTGCCGCTGGCCAACGGTGCCGAAGCCGCCATCGCCGGCCACGTCGAAGCCTTCACCGCGCGCACGCTG
CTGGAAGTCTGTGCCACGCTCAATGGCACCCAGAAGGCGCCCGCCGCCGAACTGGCGGTGCAAGCGCTCGGCGTACGCGC
CCTGCCCGACATGGCCGACGTGCGCGGCCAACCGCATGCCCGCCGCGCGCTGGAAATTGCCGCAGCCGGCGGTCACCATT
TATTGCTGGTCGGTAGCCCTGGCTGCGGCAAGACCTTGCTCGCCTCGCGCCTGCCCGGCCTGCTGCCGGAAGCCAGCGAA
GCCGAGGCGCTGGAAACCGCCGCCATTACCTCCATCAGCGGTCGCGGACTGGATCTTGTGCGCTGGCGGCAACGCCCCTA
TCGGGCTCCGCACCACACCGCCAGCGCGGTCGCCTTGGTTGGCGGCGGCACACATCCACGCCCCGGCGAGATCTCGCTGG
CCCACAACGGCGTGTTGTTTCTGGACGAGTTGCCCGAGTGGCAACGCCAAACACTGGAAGTGCTGCGCGAGCCGCTGGAA
TCGGGCCTGGTCACCATCTCGCGCGCCGCACGCAGTGTGGATTTCCCGGCAAGATTCCAACTGGTCGCTGCGATGAATCC
CTGTCCGTGCGGGTGGGCCGGCGACAGCAGCGGGCGTTGCCGTTGCAGCAGCGACACCATCGGCCGTTATCGCAGCCGGA
TCTCCGGGCCGCTGCTGGATCGCATCGATCTGCATGTCGAGGTCCCGCGCCTGCCGCCGCAGGCCCTGCGCAGCGGCAAC
GTCGGCGAGGACAGTGCCAGCGTGCGCACGCGCGTGGTCGCGGCGCGCGCGCGGCAACTTGCACGTGCCGGCGTGCCCAA
TGCACAACTGGACCAGGCACAAACCGATCATCACTGCCGCCTGCAAAATGACGATCAGCTGTTGCTGGAACGCGCCATCG
AACACCTGCAACTTTCCGCACGCTCGATGCATCGCATCCTGCGCGTGGCACGCACCATCGCCGATCTCGACGACAGCGCC
GTCATTGCAACGCGTCATCTGACCGAAGCGATCGGCTACCGCAAACTGGATCGCGCAGTGGGCACGGCAAGCGCAGCCTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.522

100

0.565
  comM Haemophilus influenzae Rd KW20

55.842

99.802

0.557
  comM Glaesserella parasuis strain SC1401

54.96

99.605

0.547
  comM Vibrio campbellii strain DS40M4

54.15

100

0.542
  comM Legionella pneumophila str. Paris

52.695

99.012

0.522
  comM Legionella pneumophila strain ERS1305867

52.695

99.012

0.522
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.26

100

0.464