Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NYR89_RS04105 Genome accession   NZ_CP103833
Coordinates   879332..879856 (+) Length   174 a.a.
NCBI ID   WP_279446454.1    Uniprot ID   -
Organism   Actinobacillus arthritidis strain CCUG24862     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 874332..884856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR89_RS04095 (NYR89_04095) - 874343..876265 (-) 1923 WP_279446452.1 ATP-dependent DNA helicase -
  NYR89_RS04100 (NYR89_04100) uvrA 876353..879181 (-) 2829 WP_279446453.1 excinuclease ABC subunit UvrA -
  NYR89_RS04105 (NYR89_04105) ssb 879332..879856 (+) 525 WP_279446454.1 single-stranded DNA-binding protein Machinery gene
  NYR89_RS04110 (NYR89_04110) - 880376..880654 (+) 279 WP_279446455.1 BrnT family toxin -
  NYR89_RS04115 (NYR89_04115) - 880629..880907 (+) 279 WP_279446456.1 BrnA antitoxin family protein -
  NYR89_RS04120 (NYR89_04120) - 881204..882091 (-) 888 WP_279446457.1 DarT ssDNA thymidine ADP-ribosyltransferase family protein -
  NYR89_RS04125 (NYR89_04125) - 882175..884151 (+) 1977 WP_279446459.1 exoribonuclease II -
  NYR89_RS04130 (NYR89_04130) - 884226..884597 (+) 372 WP_279446460.1 CidA/LrgA family protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19252.09 Da        Isoelectric Point: 4.9839

>NTDB_id=725801 NYR89_RS04105 WP_279446454.1 879332..879856(+) (ssb) [Actinobacillus arthritidis strain CCUG24862]
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRQAEVAGQYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLGGRNQGGDFGGNQGGWGNSVPAPQQSYNQGNSGYGYDQTASRPAPQAPKPAQ
AEPPMDNFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=725801 NYR89_RS04105 WP_279446454.1 879332..879856(+) (ssb) [Actinobacillus arthritidis strain CCUG24862]
ATGGCAGGTATTAATAAAGTTATCATCGTGGGCAATTTAGGTAACGATCCTGAAATGCGCACTATGCCAAACGGCGAAGC
AGTTGCAAATATTAGCGTAGCAACCAGTGAAAGTTGGACAGATAAAAATACGGGCGAACGTCGTGAAGTAACCGAATGGC
ACCGTATCGTATTCTACCGTCGCCAAGCGGAAGTTGCCGGTCAATACTTACGTAAAGGCTCACAAGTTTATGTTGAAGGC
CGTTTAAAAACACGTAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACCGAAATCCAAGGTGACGTTTTACAAAT
GTTAGGCGGACGTAACCAAGGCGGCGATTTCGGCGGCAACCAAGGCGGTTGGGGAAATTCAGTGCCTGCACCACAACAAA
GTTACAACCAAGGTAACAGCGGTTACGGTTACGATCAAACAGCAAGTCGCCCTGCTCCGCAAGCGCCGAAACCAGCTCAA
GCAGAGCCACCTATGGATAACTTCGACGACGATATCCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

76.243

100

0.793
  ssb Vibrio cholerae strain A1552

59.322

100

0.603
  ssb Neisseria meningitidis MC58

47.977

99.425

0.477
  ssb Neisseria gonorrhoeae MS11

47.977

99.425

0.477
  ssbA Bacillus subtilis subsp. subtilis str. 168

36

100

0.362