Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NYR89_RS02710 Genome accession   NZ_CP103833
Coordinates   551315..552517 (+) Length   400 a.a.
NCBI ID   WP_279446234.1    Uniprot ID   -
Organism   Actinobacillus arthritidis strain CCUG24862     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 546315..557517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR89_RS02685 (NYR89_02685) folA 547009..547497 (+) 489 WP_279446229.1 type 3 dihydrofolate reductase -
  NYR89_RS02690 (NYR89_02690) - 547622..547855 (+) 234 WP_279446230.1 YgjV family protein -
  NYR89_RS02695 (NYR89_02695) radA 547900..549279 (-) 1380 WP_279446231.1 DNA repair protein RadA -
  NYR89_RS02700 (NYR89_02700) pilA 549471..549911 (+) 441 WP_279446232.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  NYR89_RS02705 (NYR89_02705) pilB 549937..551328 (+) 1392 WP_279446233.1 GspE/PulE family protein Machinery gene
  NYR89_RS02710 (NYR89_02710) pilC 551315..552517 (+) 1203 WP_279446234.1 type II secretion system F family protein Machinery gene
  NYR89_RS02715 (NYR89_02715) - 552520..553188 (+) 669 WP_279446235.1 prepilin peptidase -
  NYR89_RS02720 (NYR89_02720) coaE 553210..553847 (+) 638 Protein_525 dephospho-CoA kinase -
  NYR89_RS02725 (NYR89_02725) yacG 553832..554023 (+) 192 WP_279446236.1 DNA gyrase inhibitor YacG -
  NYR89_RS02730 (NYR89_02730) - 554091..554921 (-) 831 WP_279446237.1 serine hydrolase -
  NYR89_RS02735 (NYR89_02735) - 555005..556042 (-) 1038 WP_279446238.1 glycosyltransferase family 9 protein -

Sequence

Protein


Download         Length: 400 a.a.        Molecular weight: 45708.54 Da        Isoelectric Point: 9.9942

>NTDB_id=725799 NYR89_RS02710 WP_279446234.1 551315..552517(+) (pilC) [Actinobacillus arthritidis strain CCUG24862]
MQKHKVYEFRWKAINKFQQSQRGCFLAETLEEVENKLLKKGYTNIRIQRNFVFSTKPSSESITQVINQLALLLNAAIPLK
QSLCMVQENSGNVRLYLWLRELIGLIESGYSLSKGLDKLKLYLVKNEIQLINIGEKSGQLGVILANIAQSRSQAEKLHKK
VKKIMFYPLMTLSISLILSIGMLLFIVPQFIELYSDKEKVLPLLTSILFSLSAFLQTYGLLIAFAFVVLGTMFIWFAKNS
TFLTAFKWRMFSLLPVFNQIITNSRIVFFSQNLALMLKNHMRLEIALNAFLSAQTQDIQLKKEINMMLTFLRQGYKLSDC
LNPTVFQSQVIQMIAVAERSGSLIQMLEHIGEIYQQKLDYQIDLLSQMIEPILMMMIGLVIGTILIGLYLPIFDMGGLAG

Nucleotide


Download         Length: 1203 bp        

>NTDB_id=725799 NYR89_RS02710 WP_279446234.1 551315..552517(+) (pilC) [Actinobacillus arthritidis strain CCUG24862]
ATGCAGAAGCATAAAGTGTATGAATTTCGCTGGAAAGCAATAAACAAATTTCAGCAATCGCAAAGAGGATGTTTTCTTGC
GGAAACACTGGAAGAGGTTGAAAATAAACTTCTTAAAAAAGGTTATACGAATATTCGTATTCAACGTAATTTTGTCTTTT
CGACAAAGCCTTCCTCAGAAAGTATTACACAAGTCATCAATCAACTAGCACTATTACTAAATGCCGCAATTCCTCTGAAA
CAATCCCTTTGTATGGTTCAGGAAAATAGTGGCAATGTTAGACTTTATTTATGGCTTCGTGAGTTAATTGGATTAATTGA
GTCGGGATATTCCTTATCAAAGGGGTTAGATAAACTTAAACTTTATTTAGTAAAAAATGAAATACAACTTATTAATATTG
GCGAAAAAAGCGGACAATTAGGCGTGATATTGGCCAATATTGCACAAAGTCGTTCTCAAGCAGAAAAGTTACATAAAAAA
GTAAAAAAGATAATGTTTTATCCATTAATGACATTAAGTATTTCCCTAATATTGTCTATCGGAATGTTGTTATTTATTGT
CCCTCAATTTATTGAATTATATAGCGATAAAGAAAAAGTTCTTCCTTTGCTTACATCCATTCTATTTTCACTATCTGCTT
TTTTGCAAACTTATGGGTTATTGATAGCATTTGCCTTTGTAGTGTTAGGTACTATGTTTATTTGGTTTGCTAAAAACAGT
ACATTTTTAACCGCTTTTAAATGGCGAATGTTCAGTTTATTGCCGGTATTTAATCAGATTATTACAAATTCGAGAATTGT
TTTTTTTAGTCAAAATTTAGCGTTAATGTTAAAAAATCATATGCGGTTGGAAATTGCATTAAATGCGTTCCTTTCTGCTC
AAACACAAGATATTCAGTTAAAAAAAGAGATAAATATGATGTTAACTTTTTTACGACAAGGCTATAAATTGTCTGACTGT
TTAAATCCAACAGTATTTCAGAGCCAAGTGATTCAAATGATCGCAGTAGCTGAACGAAGTGGTAGTTTGATTCAGATGCT
TGAGCATATAGGAGAAATATATCAACAGAAATTGGATTATCAAATTGATCTACTTTCTCAAATGATTGAGCCTATCTTAA
TGATGATGATTGGTTTAGTAATAGGCACGATTTTAATTGGCCTATATTTACCTATTTTCGATATGGGAGGCTTGGCAGGG
TAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(66-188)

Type II secretion system (T2SS), protein F (T2SSF)

(269-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Glaesserella parasuis strain SC1401

49.747

99

0.492
  pilC Haemophilus influenzae Rd KW20

41.855

99.75

0.418
  pilC Haemophilus influenzae 86-028NP

40.602

99.75

0.405