Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   NYR87_RS10140 Genome accession   NZ_CP103831
Coordinates   2180594..2180959 (-) Length   121 a.a.
NCBI ID   WP_279480894.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 1812     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2175594..2185959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR87_RS10125 (NYR87_10120) - 2176386..2177006 (+) 621 WP_279480890.1 MerR family transcriptional regulator -
  NYR87_RS10130 (NYR87_10125) gshAB 2177098..2179371 (-) 2274 WP_279480893.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -
  NYR87_RS10135 (NYR87_10130) asd 2179522..2180415 (-) 894 WP_278226642.1 archaetidylserine decarboxylase -
  NYR87_RS10140 (NYR87_10135) comEA/comE1 2180594..2180959 (-) 366 WP_279480894.1 ComEA family DNA-binding protein Machinery gene
  NYR87_RS10145 (NYR87_10140) - 2181298..2182653 (+) 1356 WP_279480897.1 LysM-like peptidoglycan-binding domain-containing protein -
  NYR87_RS10150 (NYR87_10145) - 2182727..2183182 (+) 456 WP_279480898.1 MliC family protein -
  NYR87_RS10155 (NYR87_10150) waaF 2183265..2184302 (+) 1038 WP_279480900.1 lipopolysaccharide heptosyltransferase II -
  NYR87_RS10160 (NYR87_10155) rfaC 2184378..2185337 (+) 960 WP_279480902.1 lipopolysaccharide heptosyltransferase RfaC -
  NYR87_RS10165 (NYR87_10160) rpsL 2185461..2185835 (+) 375 WP_005543325.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 12818.61 Da        Isoelectric Point: 9.7276

>NTDB_id=725787 NYR87_RS10140 WP_279480894.1 2180594..2180959(-) (comEA/comE1) [Actinobacillus equuli subsp. haemolyticus strain 1812]
MKTRSTLGLSLLIGMLSTGVLAAEKTKPSVTEPTPVVQNAQATSTEHSHAEMTNNANLVNINTATAAEIQDKLVGIGAKK
AQAIVEYRTKNGAFSSLEQLTDVSGIGKATLDKNRDRILLQ

Nucleotide


Download         Length: 366 bp        

>NTDB_id=725787 NYR87_RS10140 WP_279480894.1 2180594..2180959(-) (comEA/comE1) [Actinobacillus equuli subsp. haemolyticus strain 1812]
ATGAAAACACGTTCAACACTTGGCTTAAGTCTGTTAATCGGTATGTTATCTACCGGTGTATTAGCTGCTGAAAAAACAAA
GCCTAGCGTTACAGAACCCACTCCCGTAGTTCAAAACGCACAAGCAACCAGCACTGAACATAGCCATGCTGAAATGACAA
ACAATGCAAATTTAGTCAATATCAATACCGCAACAGCAGCGGAAATCCAAGATAAATTGGTCGGTATTGGCGCTAAAAAA
GCACAAGCAATTGTTGAATACCGTACAAAAAACGGCGCATTTAGTAGCCTAGAGCAACTTACCGATGTATCCGGTATTGG
CAAAGCTACACTGGATAAAAATCGTGATCGCATCCTATTGCAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(55-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

61.157

100

0.612
  comE1/comEA Haemophilus influenzae Rd KW20

53.191

77.686

0.413
  comEA Vibrio cholerae C6706

48.387

76.86

0.372
  comEA Vibrio cholerae strain A1552

48.387

76.86

0.372
  comEA Acinetobacter baumannii strain A118

33.846

100

0.364