Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NYR66_RS04820 Genome accession   NZ_CP103829
Coordinates   1052702..1053895 (-) Length   397 a.a.
NCBI ID   WP_279456502.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 2863     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1047702..1058895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR66_RS04795 (NYR66_04800) lptE 1049485..1049979 (+) 495 WP_278225775.1 LPS assembly lipoprotein LptE -
  NYR66_RS04800 (NYR66_04805) holA 1050096..1051121 (+) 1026 WP_279456500.1 DNA polymerase III subunit delta -
  NYR66_RS04805 (NYR66_04810) yacG 1051198..1051386 (-) 189 WP_115589824.1 DNA gyrase inhibitor YacG -
  NYR66_RS04810 (NYR66_04815) coaE 1051368..1052006 (-) 639 WP_279456501.1 dephospho-CoA kinase -
  NYR66_RS04815 (NYR66_04820) - 1052028..1052702 (-) 675 WP_275216987.1 prepilin peptidase -
  NYR66_RS04820 (NYR66_04825) pilC 1052702..1053895 (-) 1194 WP_279456502.1 type II secretion system F family protein Machinery gene
  NYR66_RS04825 (NYR66_04830) pilB 1053888..1055273 (-) 1386 WP_279456503.1 GspE/PulE family protein Machinery gene
  NYR66_RS04830 (NYR66_04835) - 1055294..1055732 (-) 439 Protein_934 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  NYR66_RS04835 (NYR66_04840) radA 1055913..1057292 (+) 1380 WP_279443725.1 DNA repair protein RadA Machinery gene
  NYR66_RS04840 (NYR66_04845) pepB 1057358..1058644 (+) 1287 WP_279456553.1 aminopeptidase PepB -

Sequence

Protein


Download         Length: 397 a.a.        Molecular weight: 44906.45 Da        Isoelectric Point: 9.6289

>NTDB_id=725719 NYR66_RS04820 WP_279456502.1 1052702..1053895(-) (pilC) [Actinobacillus equuli subsp. haemolyticus strain 2863]
MVSIFEFHWKAKNRFQQKQSGILLAQNHAEAEQKLLAKGYQDIRIQRNFAFAQQPKADEITQFIAQLALLINASIPFKQA
LMMQQENCTNIKLYQWLLALNAAVTSGYSFSASLAKLGCYFSKQEIQLIRIGEQSGKLGTVLDNLAKTRSQSEKLTKKVR
KIMFYPLIVLVISCVLTLGLLVFIVPQFADLYMDKAQNLPWLTSLLFSLSAFLRQNGIFLCCSGIVAMGMLLCFAKKFGN
LTACQMRLLSYIPFFNQVIRYTRIIFFTQNLALMLSAHLHLEVALNAFLSEKMHDRLLQQQIRLTLSLLKQGYKFSEGLN
PTVFTSQVVQMIAIGEKSANLAVMCTQISDIYQLKLDYQIDLLSQLLEPVLMLLMGIIIGTVLIGLYLPIFDLGVLV

Nucleotide


Download         Length: 1194 bp        

>NTDB_id=725719 NYR66_RS04820 WP_279456502.1 1052702..1053895(-) (pilC) [Actinobacillus equuli subsp. haemolyticus strain 2863]
ATGGTTAGTATTTTTGAATTTCACTGGAAAGCGAAGAATCGGTTCCAACAAAAACAAAGCGGTATTTTATTAGCCCAAAA
TCATGCTGAGGCAGAGCAAAAGCTCTTGGCAAAAGGCTATCAAGATATTCGTATTCAACGCAATTTTGCTTTTGCTCAAC
AGCCTAAAGCAGATGAAATTACTCAATTTATTGCGCAATTAGCATTATTGATTAACGCTTCCATTCCTTTTAAACAAGCG
TTAATGATGCAGCAGGAAAATTGTACGAATATTAAATTATATCAGTGGCTACTTGCTTTGAATGCTGCTGTGACATCCGG
ATATAGTTTTTCTGCAAGTTTAGCGAAATTAGGGTGTTATTTTTCTAAGCAAGAAATCCAATTAATTCGTATTGGTGAAC
AAAGTGGTAAATTAGGTACTGTTTTGGATAATCTTGCTAAAACACGTAGCCAGTCCGAAAAATTAACGAAAAAAGTTAGA
AAAATTATGTTTTATCCGCTGATTGTGTTAGTCATTTCATGTGTATTGACTCTAGGGCTGTTAGTATTCATTGTGCCTCA
ATTTGCCGACTTATATATGGATAAAGCACAAAATTTACCATGGCTAACGTCATTATTGTTTTCTCTCTCTGCGTTTCTAC
GACAAAATGGGATATTCCTATGCTGTAGCGGTATAGTAGCGATGGGGATGTTGCTCTGTTTTGCAAAAAAATTCGGAAAT
TTGACCGCTTGTCAGATGCGTCTTTTGTCTTATATTCCCTTCTTTAATCAAGTTATTCGCTATACACGAATTATATTCTT
TACTCAGAATTTGGCGTTAATGTTAAGTGCCCATCTGCATTTAGAGGTTGCCCTAAACGCTTTTTTATCTGAGAAAATGC
ACGATCGACTTTTACAGCAACAAATACGGCTTACATTATCTTTATTAAAACAGGGGTATAAATTTTCGGAAGGATTAAAC
CCGACTGTATTCACTTCTCAAGTAGTACAAATGATAGCAATAGGGGAGAAAAGTGCTAATTTAGCGGTGATGTGTACGCA
GATTAGTGATATTTATCAGCTGAAATTAGATTATCAAATAGATTTGCTTTCACAATTACTTGAGCCGGTTTTAATGCTAC
TTATGGGTATCATTATTGGTACGGTTTTAATTGGGCTTTATTTGCCGATTTTTGACTTAGGGGTTCTCGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(63-186)

Type II secretion system (T2SS), protein F (T2SSF)

(267-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Glaesserella parasuis strain SC1401

48.363

100

0.484
  pilC Haemophilus influenzae Rd KW20

39

100

0.393
  pilC Haemophilus influenzae 86-028NP

38.75

100

0.39