Detailed information NTG0725721

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: NYR66_RS04835
• Genome accession: NZ_CP103829
• Coordinates: 1055913..1057292 (+)
• Length: 459 a.a.
• NCBI ID: WP_279443725.1
• Uniprot ID: -
• Organism: Actinobacillus equuli subsp. haemolyticus strain 2863
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1050913..1062292

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NYR66_RS04805 (NYR66_04810)	yacG	1051198..1051386 (-)	189	WP_115589824.1	DNA gyrase inhibitor YacG	-
NYR66_RS04810 (NYR66_04815)	coaE	1051368..1052006 (-)	639	WP_279456501.1	dephospho-CoA kinase	-
NYR66_RS04815 (NYR66_04820)	-	1052028..1052702 (-)	675	WP_275216987.1	prepilin peptidase	-
NYR66_RS04820 (NYR66_04825)	pilC	1052702..1053895 (-)	1194	WP_279456502.1	type II secretion system F family protein	Machinery gene
NYR66_RS04825 (NYR66_04830)	pilB	1053888..1055273 (-)	1386	WP_279456503.1	GspE/PulE family protein	Machinery gene
NYR66_RS04830 (NYR66_04835)	-	1055294..1055732 (-)	439	Protein_934	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
NYR66_RS04835 (NYR66_04840)	radA	1055913..1057292 (+)	1380	WP_279443725.1	DNA repair protein RadA	Machinery gene
NYR66_RS04840 (NYR66_04845)	pepB	1057358..1058644 (+)	1287	WP_279456553.1	aminopeptidase PepB	-
NYR66_RS04845 (NYR66_04850)	-	1058772..1059707 (+)	936	WP_279439099.1	KpsF/GutQ family sugar-phosphate isomerase	-
NYR66_RS04850 (NYR66_04855)	greB	1059717..1060205 (+)	489	WP_279456504.1	transcription elongation factor GreB	-
NYR66_RS04855 (NYR66_04860)	ribE	1060295..1060756 (-)	462	WP_279456505.1	6,7-dimethyl-8-ribityllumazine synthase	-
NYR66_RS04860 (NYR66_04865)	-	1060867..1062072 (-)	1206	WP_279456506.1	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	-

Sequence

Protein

• Length: 459 a.a.
• Molecular weight: 49712.40 Da
• Isoelectric Point: 7.9500

>NTDB_id=725721 NYR66_RS04835 WP_279443725.1 1055913..1057292(+) (radA) [Actinobacillus equuli subsp. haemolyticus strain 2863]
MAKAPKTAYVCNDCGAEYSRWMGQCKECKAWNTISEVRLISSKESSKNDRFSGYAGETSGKVQTLSEISLQEVPRFSSGF
NELDRVLGGGVVPGSAILIGGHPGAGKSTLLLQVMCGLSKMLPTLYVTGEESLQQVAMRANRLGLPTDNLKMLSETSVEH
ICNIADQEKPKLMVIDSIQVMHLSDIQSSPGSVAQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDASL
LLEGESDSRFRTLRSQKNRFGAVNELGVFAMTEQGLREVKNPSAIFLSRSDELVSGSSVMVLWEGTRPLLVEIQALVDHS
MLANPRRVAVGLDHNRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALILALISSFRNRPLPQDLVIFGEVG
LAGEIRPVPSGQERISEAAKHGFKRAIVPFSNMPKKPIKDMEVIGVKKLSDALDALGNL

Nucleotide

• Length: 1380 bp

>NTDB_id=725721 NYR66_RS04835 WP_279443725.1 1055913..1057292(+) (radA) [Actinobacillus equuli subsp. haemolyticus strain 2863]
ATGGCAAAAGCACCAAAAACGGCTTACGTATGTAATGATTGTGGCGCAGAATATTCTCGCTGGATGGGTCAATGCAAAGA
GTGCAAAGCATGGAATACGATTAGTGAAGTTCGCTTAATCTCTAGTAAAGAATCAAGCAAAAATGACCGCTTCAGTGGCT
ATGCTGGAGAGACTTCAGGCAAGGTACAAACACTTTCAGAAATCAGCTTACAAGAAGTGCCTCGTTTTAGTAGTGGGTTT
AATGAGCTTGATCGCGTACTCGGCGGTGGCGTGGTGCCCGGTTCTGCTATTCTTATCGGGGGACATCCCGGTGCGGGAAA
ATCGACACTATTACTGCAAGTGATGTGTGGTTTATCAAAAATGCTGCCAACACTCTATGTCACAGGCGAAGAATCATTAC
AACAGGTTGCAATGCGTGCTAATCGTTTAGGGCTACCAACCGATAATCTAAAAATGCTTTCGGAAACATCTGTCGAACAT
ATTTGCAATATTGCCGACCAAGAAAAACCTAAATTAATGGTAATTGACTCTATTCAAGTGATGCATTTATCCGATATTCA
ATCCTCGCCGGGTTCTGTTGCTCAAGTACGAGAATGCGCATCATTTCTTACCCGCTATGCCAAAACACGCCAAGTGGCAA
TTATTATGGTCGGTCACGTCACCAAAGACGGTACGCTTGCCGGCCCAAAAGTGTTGGAACACGCTATTGATGCCTCATTA
TTGCTAGAAGGTGAATCTGATTCACGTTTCAGAACATTACGAAGCCAAAAAAACCGATTCGGCGCGGTAAATGAACTTGG
TGTGTTTGCTATGACTGAACAAGGTTTGCGAGAAGTTAAAAATCCATCCGCTATTTTTTTAAGCCGTAGTGATGAATTGG
TTTCAGGCAGTTCTGTTATGGTACTTTGGGAGGGGACTCGCCCATTATTAGTCGAAATTCAAGCGCTGGTTGATCATTCT
ATGCTTGCAAATCCACGTCGTGTGGCTGTCGGTTTAGATCATAATCGCTTATCGCTCTTACTTGCCGTACTCCACCGCCA
TGGTGGGCTACAAATGTCTGACCAAGATGTTTTTGTTAACGTTGTTGGAGGCGTAAAAGTAACGGAAACCAGTGCTGATC
TCGCTTTAATTTTGGCACTGATATCAAGTTTTAGAAATCGTCCATTACCACAGGACTTAGTAATTTTTGGTGAAGTAGGG
CTTGCCGGCGAAATTCGTCCGGTGCCGAGTGGTCAAGAACGTATTAGCGAAGCGGCAAAACACGGTTTTAAACGTGCAAT
CGTGCCGTTTAGCAATATGCCGAAAAAACCGATAAAAGATATGGAAGTGATTGGGGTTAAAAAATTAAGTGATGCGCTAG
ATGCACTTGGTAATTTATAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (83-224)

• Subunit ChlI of Mg-chelatase (ChlI) (347-432)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (9-36)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	49.015	99.564	0.488
radA	Streptococcus mitis NCTC 12261	44.835	99.129	0.444
radA	Streptococcus pneumoniae Rx1	44.615	99.129	0.442
radA	Streptococcus pneumoniae D39	44.615	99.129	0.442
radA	Streptococcus pneumoniae R6	44.615	99.129	0.442
radA	Streptococcus pneumoniae TIGR4	44.615	99.129	0.442
radA	Streptococcus mitis SK321	44.615	99.129	0.442