Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NYR83_RS08720 Genome accession   NZ_CP103828
Coordinates   1921269..1922423 (-) Length   384 a.a.
NCBI ID   WP_279443105.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. equuli strain 3009     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1916269..1927423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR83_RS08700 (NYR83_08700) secE 1916638..1917051 (-) 414 WP_039198278.1 preprotein translocase subunit SecE -
  NYR83_RS08705 (NYR83_08705) - 1917357..1917629 (+) 273 WP_039198279.1 PTS sugar transporter subunit IIB -
  NYR83_RS08710 (NYR83_08710) - 1917638..1918999 (+) 1362 WP_279443103.1 PTS ascorbate transporter subunit IIC -
  NYR83_RS08715 (NYR83_08715) - 1919219..1921225 (+) 2007 WP_279443104.1 oligopeptide transporter, OPT family -
  NYR83_RS08720 (NYR83_08720) dprA 1921269..1922423 (-) 1155 WP_279443105.1 DNA-processing protein DprA Machinery gene
  NYR83_RS08725 (NYR83_08725) def 1922608..1923120 (+) 513 WP_039195517.1 peptide deformylase -
  NYR83_RS08730 (NYR83_08730) rfaD 1923261..1924187 (+) 927 WP_279443106.1 ADP-glyceromanno-heptose 6-epimerase -
  NYR83_RS08735 (NYR83_08735) - 1924270..1924599 (-) 330 WP_005620515.1 SMR family transporter -
  NYR83_RS08740 (NYR83_08740) - 1924688..1924978 (-) 291 WP_005598984.1 YfcZ/YiiS family protein -
  NYR83_RS08745 (NYR83_08745) - 1925119..1925751 (-) 633 WP_279443107.1 tellurite resistance TerB family protein -
  NYR83_RS08750 (NYR83_08750) - 1925928..1926218 (-) 291 WP_039198287.1 putative quinol monooxygenase -
  NYR83_RS08755 (NYR83_08755) - 1926240..1927052 (-) 813 WP_039199081.1 urease accessory protein UreD -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42744.06 Da        Isoelectric Point: 5.8759

>NTDB_id=725704 NYR83_RS08720 WP_279443105.1 1921269..1922423(-) (dprA) [Actinobacillus equuli subsp. equuli strain 3009]
MSQTDLLKLLQIPQLGAQRIARLLSEVDFAQFCQYDKRQLQQIGWNEKQIQRWFNPEMRWIESALAWAEQPNQHLLTLFD
EEYPFLLRQISTAPPVLFVRGSLSSLSLPQIAIVGSRDFSAYGEYWAGYFTEQLIKHHLAVTSGLAIGIDGFCHQRAVAE
QGITIAVLGSGLDQVYPARHKKLADQIVASGGALVSEFFPNQPPLAENFPRRNRIISGLSLGTLVVEATVNSGSLITARY
ALEQGREVFALPNSVQNPYAQGCHKLIKEGALLTETIEDILQAIQYQLPDQPRQQALFEPPQAVEKAPFFAKADVPNKVN
HFAKKLPEITACQQQIVEHIGLNPISIDDLAKATTLEVETLLVELLGLELLSVIKQVSGGYVRQ

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=725704 NYR83_RS08720 WP_279443105.1 1921269..1922423(-) (dprA) [Actinobacillus equuli subsp. equuli strain 3009]
ATGTCACAGACTGATTTACTGAAATTATTGCAGATTCCGCAACTGGGCGCGCAGCGAATAGCTCGTCTGTTATCCGAAGT
GGATTTCGCCCAATTTTGCCAATATGACAAGCGCCAATTACAACAAATCGGTTGGAACGAAAAACAAATTCAGCGCTGGT
TCAATCCGGAAATGCGTTGGATTGAGAGTGCATTGGCGTGGGCGGAGCAACCGAATCAACATTTATTGACCTTATTTGAT
GAGGAATATCCGTTTTTATTACGGCAAATCAGCACCGCACCGCCGGTATTATTTGTGCGAGGTTCGCTAAGCAGTTTGAG
TCTACCGCAAATTGCGATTGTCGGTAGCCGGGATTTTTCCGCCTACGGAGAATATTGGGCGGGCTATTTTACCGAGCAAC
TGATTAAACATCATTTGGCGGTAACCAGCGGACTCGCGATAGGTATAGACGGTTTTTGTCATCAGCGAGCGGTAGCGGAA
CAGGGAATCACTATTGCCGTTTTGGGTAGCGGTTTAGATCAAGTGTATCCGGCAAGGCATAAAAAATTGGCGGATCAGAT
TGTCGCAAGCGGCGGGGCGTTAGTGTCGGAATTTTTTCCGAATCAACCGCCGCTTGCCGAGAATTTTCCTCGTCGTAATC
GGATTATCAGCGGTTTATCACTCGGTACATTAGTGGTGGAAGCCACGGTGAATAGCGGTTCACTGATTACTGCGCGCTAT
GCGTTGGAGCAAGGGCGAGAAGTTTTTGCGTTACCGAATTCGGTACAAAATCCGTATGCACAAGGCTGTCATAAACTGAT
CAAAGAAGGGGCGCTTTTAACTGAGACGATAGAGGATATTTTGCAAGCGATTCAATATCAACTGCCGGATCAGCCTCGGC
AACAGGCTCTGTTTGAACCGCCACAAGCGGTTGAAAAAGCCCCATTTTTTGCAAAAGCTGATGTGCCAAATAAGGTAAAT
CATTTTGCAAAAAAATTGCCGGAAATAACCGCTTGTCAGCAACAAATTGTGGAACATATCGGTCTTAATCCGATTTCGAT
TGATGATTTAGCGAAAGCGACCACATTGGAGGTGGAAACGCTATTAGTTGAGTTACTGGGTTTGGAATTATTAAGCGTGA
TTAAGCAGGTGAGTGGCGGTTATGTCAGACAATAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(324-380)

DNA recombination-mediator protein A (DNA_processg_A)

(69-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

74.541

99.219

0.74
  dprA Vibrio campbellii strain DS40M4

46.579

98.958

0.461
  dprA Haemophilus influenzae Rd KW20

49.856

90.365

0.451
  dprA Vibrio cholerae strain A1552

42.239

100

0.432
  dprA Legionella pneumophila strain ERS1305867

37.076

99.74

0.37
  dprA Neisseria gonorrhoeae MS11

38.147

95.573

0.365