Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NYR83_RS04735 Genome accession   NZ_CP103828
Coordinates   1076457..1077650 (-) Length   397 a.a.
NCBI ID   WP_279443722.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. equuli strain 3009     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1071457..1082650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR83_RS04710 (NYR83_04710) lptE 1073249..1073743 (+) 495 WP_279443718.1 LPS assembly lipoprotein LptE -
  NYR83_RS04715 (NYR83_04715) holA 1073851..1074876 (+) 1026 WP_279443719.1 DNA polymerase III subunit delta -
  NYR83_RS04720 (NYR83_04720) yacG 1074953..1075141 (-) 189 WP_005623139.1 DNA gyrase inhibitor YacG -
  NYR83_RS04725 (NYR83_04725) coaE 1075123..1075761 (-) 639 WP_279443720.1 dephospho-CoA kinase -
  NYR83_RS04730 (NYR83_04730) - 1075783..1076457 (-) 675 WP_279443721.1 prepilin peptidase -
  NYR83_RS04735 (NYR83_04735) pilC 1076457..1077650 (-) 1194 WP_279443722.1 type II secretion system F family protein Machinery gene
  NYR83_RS04740 (NYR83_04740) pilB 1077643..1079028 (-) 1386 WP_279443723.1 GspE/PulE family protein Machinery gene
  NYR83_RS04745 (NYR83_04745) pilA 1079049..1079486 (-) 438 WP_279443724.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  NYR83_RS04750 (NYR83_04750) radA 1079667..1081046 (+) 1380 WP_279443725.1 DNA repair protein RadA Machinery gene
  NYR83_RS04755 (NYR83_04755) pepB 1081112..1082398 (+) 1287 WP_279443781.1 aminopeptidase PepB -

Sequence

Protein


Download         Length: 397 a.a.        Molecular weight: 44903.41 Da        Isoelectric Point: 9.5205

>NTDB_id=725693 NYR83_RS04735 WP_279443722.1 1076457..1077650(-) (pilC) [Actinobacillus equuli subsp. equuli strain 3009]
MVSIFEFHWKAKNRFQQKQSGILLAQNHAEAEQKLLAKGYQDIHIQRNFTFARQPKADEITQFIAQLALLINASIPFKQA
LMMQQENCTNIKLYQWLLALNAAVTSGYSFSASLAKLGCYFSKQEIQLIRIGEQSGKLGTVLDNLAKTRSQSEKLTKKVR
KIMFYPLIVLVISCVLTLGLLVFIVPQFADLYMDKAQNLPWLTSLLFSLSAFLRQNGIFLCCSGIVAMGMLLCFAKKFGN
LTACQMRLLSYIPFFNQVIRYTRIIFFTQNLALMLSAHLHLEVALNAFLSEKMHDRLLQQQVQLTLSLLKQGYKFSEGLN
PTVFTSQVVQMIAIGEKSANLAVMCTQISDIYQLKLDYQIDLLSQLLEPVLMLLMGIIIGTVLIGLYLPIFDLGVLV

Nucleotide


Download         Length: 1194 bp        

>NTDB_id=725693 NYR83_RS04735 WP_279443722.1 1076457..1077650(-) (pilC) [Actinobacillus equuli subsp. equuli strain 3009]
ATGGTTAGTATTTTTGAATTTCACTGGAAAGCGAAGAATCGTTTTCAACAAAAACAAAGCGGTATTTTATTAGCCCAAAA
TCATGCTGAGGCAGAACAAAAGCTCTTGGCAAAAGGTTATCAAGATATTCATATTCAACGTAATTTTACTTTTGCTCGAC
AGCCTAAAGCAGATGAAATTACTCAATTTATTGCGCAATTAGCATTATTGATTAACGCTTCCATTCCTTTTAAACAAGCG
TTAATGATGCAGCAGGAAAATTGTACGAATATTAAATTATATCAGTGGCTACTTGCTTTGAATGCTGCTGTGACATCCGG
ATATAGTTTTTCTGCAAGTTTAGCGAAATTAGGGTGTTATTTTTCTAAGCAAGAAATCCAATTAATTCGTATTGGTGAAC
AAAGTGGTAAATTAGGTACTGTTTTGGATAATCTTGCTAAAACACGTAGCCAGTCCGAAAAATTAACGAAAAAAGTTAGA
AAAATTATGTTTTATCCGCTGATTGTGTTAGTCATTTCATGTGTATTGACTCTAGGGCTGTTAGTATTCATTGTGCCTCA
ATTTGCCGACTTATATATGGATAAAGCACAAAATTTACCATGGCTAACGTCATTATTGTTTTCTCTCTCTGCGTTTCTAC
GACAAAATGGGATATTCCTATGCTGTAGCGGTATAGTAGCGATGGGGATGTTGCTCTGTTTTGCAAAAAAATTCGGAAAT
TTGACCGCTTGTCAGATGCGTCTTTTGTCTTATATTCCCTTCTTTAATCAAGTTATTCGCTATACACGAATTATATTCTT
TACTCAGAATTTGGCGTTAATGTTAAGTGCCCATCTGCATTTAGAGGTTGCCCTAAACGCTTTTTTATCTGAGAAAATGC
ACGATCGACTTTTACAACAACAAGTACAGCTTACGTTATCTTTATTAAAACAGGGGTATAAATTTTCGGAAGGATTAAAC
CCGACTGTATTCACTTCTCAAGTAGTACAAATGATAGCAATAGGGGAGAAAAGTGCTAATTTAGCGGTGATGTGTACGCA
GATTAGTGATATTTATCAGCTGAAATTAGATTATCAAATAGATTTGCTTTCACAATTACTTGAGCCGGTTTTAATGCTAC
TTATGGGTATCATTATTGGTACGGTTTTAATTGGGCTTTATTTGCCGATTTTTGACTTAGGGGTTCTCGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(63-186)

Type II secretion system (T2SS), protein F (T2SSF)

(267-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Glaesserella parasuis strain SC1401

48.111

100

0.481
  pilC Haemophilus influenzae Rd KW20

39

100

0.393
  pilC Haemophilus influenzae 86-028NP

38.75

100

0.39