Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   NYR81_RS10235 Genome accession   NZ_CP103826
Coordinates   2171880..2172245 (-) Length   121 a.a.
NCBI ID   WP_279441968.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 3113     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2166880..2177245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR81_RS10220 (NYR81_10220) - 2167671..2168291 (+) 621 WP_015674354.1 MerR family transcriptional regulator -
  NYR81_RS10225 (NYR81_10225) gshAB 2168383..2170656 (-) 2274 WP_279441966.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -
  NYR81_RS10230 (NYR81_10230) asd 2170808..2171701 (-) 894 WP_279441967.1 archaetidylserine decarboxylase -
  NYR81_RS10235 (NYR81_10235) comEA/comE1 2171880..2172245 (-) 366 WP_279441968.1 ComEA family DNA-binding protein Machinery gene
  NYR81_RS10240 (NYR81_10240) - 2172584..2173940 (+) 1357 Protein_1962 LysM-like peptidoglycan-binding domain-containing protein -
  NYR81_RS10245 (NYR81_10245) - 2174037..2174468 (+) 432 WP_279479326.1 GlcNAc transferase -
  NYR81_RS10250 (NYR81_10250) waaF 2174551..2175588 (+) 1038 WP_279479328.1 lipopolysaccharide heptosyltransferase II -
  NYR81_RS10255 (NYR81_10255) rfaC 2175664..2176623 (+) 960 WP_279479331.1 lipopolysaccharide heptosyltransferase RfaC -
  NYR81_RS10260 (NYR81_10260) rpsL 2176747..2177121 (+) 375 WP_005543325.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 12854.69 Da        Isoelectric Point: 8.6053

>NTDB_id=725659 NYR81_RS10235 WP_279441968.1 2171880..2172245(-) (comEA/comE1) [Actinobacillus equuli subsp. haemolyticus strain 3113]
MKTRSTLGLSLLIGMLSTGVLAAEKTKPSVTEPTPVVQNAQATDPEHSHAEMTNNANLVNINIATAAEIQDKLVGIGAKK
AQAIVEYRTKNGAFSSLEQLTDVSGIGKATLDKNRDRILLQ

Nucleotide


Download         Length: 366 bp        

>NTDB_id=725659 NYR81_RS10235 WP_279441968.1 2171880..2172245(-) (comEA/comE1) [Actinobacillus equuli subsp. haemolyticus strain 3113]
ATGAAAACACGTTCAACACTTGGCTTAAGTCTGTTAATCGGTATGTTATCTACCGGTGTATTAGCTGCTGAAAAAACAAA
GCCTAGCGTTACAGAACCCACTCCCGTAGTTCAAAACGCACAAGCAACCGACCCTGAACATAGCCATGCTGAAATGACAA
ACAATGCAAATTTAGTCAATATCAATATCGCAACAGCAGCGGAAATCCAAGATAAATTAGTCGGTATTGGCGCTAAAAAA
GCACAAGCAATTGTTGAATACCGTACAAAAAACGGTGCATTTAGTAGCCTAGAGCAACTTACCGATGTATCCGGTATCGG
CAAAGCTACACTGGATAAAAATCGTGATCGCATCCTATTGCAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(55-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

60.656

100

0.612
  comE1/comEA Haemophilus influenzae Rd KW20

51.064

77.686

0.397
  comEA Vibrio cholerae C6706

48.387

76.86

0.372
  comEA Vibrio cholerae strain A1552

48.387

76.86

0.372
  comEA Acinetobacter baumannii strain A118

33.846

100

0.364