Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   PZ484_RS26880 Genome accession   NZ_CP119298
Coordinates   5799923..5800546 (-) Length   207 a.a.
NCBI ID   WP_003103268.1    Uniprot ID   G3XD51
Organism   Pseudomonas aeruginosa strain SNDPR-01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5794923..5805546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PZ484_RS26860 aroB 5795518..5796624 (-) 1107 WP_003162482.1 3-dehydroquinate synthase -
  PZ484_RS26865 aroK 5796674..5797192 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PZ484_RS26870 pilQ 5797204..5799348 (-) 2145 WP_003161249.1 type 4a pilus secretin PilQ Machinery gene
  PZ484_RS26875 comL/pilP 5799402..5799926 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PZ484_RS26880 pilO 5799923..5800546 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PZ484_RS26885 pilN 5800543..5801139 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PZ484_RS26890 pilM 5801139..5802203 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PZ484_RS26895 - 5802388..5804859 (+) 2472 WP_043096086.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22819.26 Da        Isoelectric Point: 4.7787

>NTDB_id=725637 PZ484_RS26880 WP_003103268.1 5799923..5800546(-) (pilO) [Pseudomonas aeruginosa strain SNDPR-01]
MSLASSLESLRKIDINDLDLNNIGSWPAAVKVIVCVLLTAAVLALGYNFHLSDMQAQLEQQAAEEETLKQQFSTKAFQAA
NLEAYKAQMKEMEESFGALLRQLPSDTEVPGLLEDITRTGLGSGLEFEEIKLLPEVAQQFYIELPIQISVVGGYHDLATF
VSGVSSLPRIVTLHDFEIKPVAPGSTSKLRMSILAKTYRYNDKGLKK

Nucleotide


Download         Length: 624 bp        

>NTDB_id=725637 PZ484_RS26880 WP_003103268.1 5799923..5800546(-) (pilO) [Pseudomonas aeruginosa strain SNDPR-01]
ATGAGTCTGGCCAGTTCCCTGGAAAGTCTGCGCAAGATCGATATCAACGATCTCGACCTGAACAACATCGGTTCCTGGCC
GGCGGCGGTCAAGGTCATCGTCTGCGTGCTGCTGACCGCGGCGGTCCTGGCGCTGGGTTACAACTTCCATCTGAGTGACA
TGCAGGCTCAGCTCGAACAGCAGGCCGCGGAAGAGGAGACGCTCAAGCAGCAGTTCTCCACCAAGGCCTTCCAGGCCGCG
AACCTGGAAGCCTACAAGGCACAGATGAAGGAGATGGAAGAGTCCTTTGGCGCCTTGCTGCGGCAGTTGCCCAGCGACAC
CGAGGTACCCGGGCTGCTCGAGGACATCACTCGTACCGGCCTGGGCAGCGGCCTGGAGTTCGAGGAAATCAAGCTGCTTC
CCGAGGTTGCCCAGCAGTTCTACATCGAGCTGCCGATCCAGATCAGCGTGGTCGGCGGCTACCACGACCTAGCGACCTTC
GTCAGCGGCGTGTCCAGCCTGCCGCGGATCGTCACCCTGCATGACTTCGAGATCAAGCCGGTCGCGCCCGGCAGCACGTC
CAAGCTGCGCATGAGCATCCTGGCCAAGACCTATCGCTACAACGACAAGGGGCTGAAGAAATGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilO (PilO)

(58-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G3XD51

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Legionella pneumophila strain ERS1305867

46.114

93.237

0.43
  pilO Acinetobacter baumannii D1279779

43.979

92.271

0.406
  comO/pilO Acinetobacter baylyi ADP1

43.455

92.271

0.401