Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   PZ484_RS26875 Genome accession   NZ_CP119298
Coordinates   5799402..5799926 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain SNDPR-01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5794402..5804926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PZ484_RS26860 aroB 5795518..5796624 (-) 1107 WP_003162482.1 3-dehydroquinate synthase -
  PZ484_RS26865 aroK 5796674..5797192 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PZ484_RS26870 pilQ 5797204..5799348 (-) 2145 WP_003161249.1 type 4a pilus secretin PilQ Machinery gene
  PZ484_RS26875 comL/pilP 5799402..5799926 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PZ484_RS26880 pilO 5799923..5800546 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PZ484_RS26885 pilN 5800543..5801139 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PZ484_RS26890 pilM 5801139..5802203 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PZ484_RS26895 - 5802388..5804859 (+) 2472 WP_043096086.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=725636 PZ484_RS26875 WP_003095836.1 5799402..5799926(-) (comL/pilP) [Pseudomonas aeruginosa strain SNDPR-01]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=725636 PZ484_RS26875 WP_003095836.1 5799402..5799926(-) (comL/pilP) [Pseudomonas aeruginosa strain SNDPR-01]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362