Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   NYR80_RS10070 Genome accession   NZ_CP103825
Coordinates   2172473..2172838 (-) Length   121 a.a.
NCBI ID   WP_279437121.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 3282     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2167473..2177838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR80_RS10060 (NYR80_10065) - 2168935..2171292 (-) 2358 WP_279437119.1 DEAD/DEAH box helicase family protein -
  NYR80_RS10065 (NYR80_10070) asd 2171404..2172294 (-) 891 WP_279437120.1 archaetidylserine decarboxylase -
  NYR80_RS10070 (NYR80_10075) comEA/comE1 2172473..2172838 (-) 366 WP_279437121.1 ComEA family DNA-binding protein Machinery gene
  NYR80_RS10075 (NYR80_10080) - 2173177..2174556 (+) 1380 WP_279437122.1 LysM-like peptidoglycan-binding domain-containing protein -
  NYR80_RS10080 (NYR80_10085) - 2174630..2175085 (+) 456 WP_275218342.1 MliC family protein -
  NYR80_RS10085 (NYR80_10090) waaF 2175168..2176205 (+) 1038 WP_279437123.1 lipopolysaccharide heptosyltransferase II -
  NYR80_RS10090 (NYR80_10095) rfaC 2176281..2177240 (+) 960 WP_279437125.1 lipopolysaccharide heptosyltransferase RfaC -
  NYR80_RS10095 (NYR80_10100) rpsL 2177363..2177737 (+) 375 WP_005543325.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 12845.68 Da        Isoelectric Point: 10.0523

>NTDB_id=725635 NYR80_RS10070 WP_279437121.1 2172473..2172838(-) (comEA/comE1) [Actinobacillus equuli subsp. haemolyticus strain 3282]
MKTRSKLGLSLLIGMLSTGVLAAEKTKPSVTEPTPVVQNAQATSTEHSHAEMTNNANLVNINTATAAEIQDKLVGIGAKK
AQAIVEYRTKNGAFSSLEQLTDVSGIGKATLDKNRDRILLQ

Nucleotide


Download         Length: 366 bp        

>NTDB_id=725635 NYR80_RS10070 WP_279437121.1 2172473..2172838(-) (comEA/comE1) [Actinobacillus equuli subsp. haemolyticus strain 3282]
ATGAAAACACGTTCAAAACTTGGCTTAAGTCTGTTAATCGGTATGTTATCTACCGGTGTATTAGCTGCTGAAAAAACAAA
GCCTAGCGTTACAGAACCCACTCCCGTAGTTCAAAACGCACAAGCAACCAGCACTGAACATAGCCATGCTGAAATGACAA
ACAATGCAAATTTAGTCAATATCAATACCGCAACAGCAGCGGAAATCCAAGATAAATTGGTCGGTATTGGCGCTAAAAAA
GCACAAGCAATTGTTGAATACCGTACAAAAAACGGCGCATTTAGTAGCCTAGAGCAACTTACCGATGTATCCGGTATTGG
CAAAGCTACACTGGATAAAAATCGTGATCGCATCCTATTGCAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(55-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

61.157

100

0.612
  comE1/comEA Haemophilus influenzae Rd KW20

53.191

77.686

0.413
  comEA Vibrio cholerae C6706

48.387

76.86

0.372
  comEA Vibrio cholerae strain A1552

48.387

76.86

0.372
  comEA Acinetobacter baumannii strain A118

33.846

100

0.364