Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   NYR79_RS01045 Genome accession   NZ_CP103824
Coordinates   229734..230099 (+) Length   121 a.a.
NCBI ID   WP_279455064.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 3524     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 224734..235099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR79_RS01020 (NYR79_01020) rpsL 224835..225209 (-) 375 WP_005543325.1 30S ribosomal protein S12 -
  NYR79_RS01025 (NYR79_01025) rfaC 225332..226291 (-) 960 WP_279443788.1 lipopolysaccharide heptosyltransferase RfaC -
  NYR79_RS01030 (NYR79_01030) waaF 226367..227404 (-) 1038 WP_279455060.1 lipopolysaccharide heptosyltransferase II -
  NYR79_RS01035 (NYR79_01035) - 227487..227942 (-) 456 WP_279455061.1 MliC family protein -
  NYR79_RS01040 (NYR79_01040) - 228016..229392 (-) 1377 WP_279455062.1 LysM-like peptidoglycan-binding domain-containing protein -
  NYR79_RS01045 (NYR79_01045) comEA/comE1 229734..230099 (+) 366 WP_279455064.1 ComEA family DNA-binding protein Machinery gene
  NYR79_RS01050 (NYR79_01050) asd 230275..231168 (+) 894 WP_279455065.1 archaetidylserine decarboxylase -
  NYR79_RS01055 (NYR79_01055) gshAB 231319..233592 (+) 2274 WP_279455066.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -
  NYR79_RS01060 (NYR79_01060) - 233684..234304 (-) 621 WP_279455067.1 MerR family transcriptional regulator -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 12803.60 Da        Isoelectric Point: 10.0523

>NTDB_id=725586 NYR79_RS01045 WP_279455064.1 229734..230099(+) (comEA/comE1) [Actinobacillus equuli subsp. haemolyticus strain 3524]
MKTRSKLGLSLLIGMLSTGVLAAEKTKPSVTEPTPVVQNAQATSTEHSHAEMTNNANLVNINTATAAEIQDKLVGIGAKK
AQAIVEYRTKNGAFSSLEQLTDVSGIGKATLDKNRDRIALQ

Nucleotide


Download         Length: 366 bp        

>NTDB_id=725586 NYR79_RS01045 WP_279455064.1 229734..230099(+) (comEA/comE1) [Actinobacillus equuli subsp. haemolyticus strain 3524]
ATGAAAACACGTTCAAAACTTGGCTTAAGTCTGTTAATCGGTATGTTATCTACCGGTGTATTAGCTGCTGAAAAAACAAA
GCCTAGCGTTACAGAACCCACTCCCGTAGTTCAAAACGCACAAGCAACCAGCACTGAACATAGCCATGCTGAAATGACAA
ACAATGCAAATTTAGTCAATATCAATACCGCAACAGCAGCGGAAATCCAAGATAAATTGGTCGGTATTGGCGCTAAAAAA
GCACAAGCGATAGTTGAATATCGTACGAAAAATGGCGCGTTTAGCAGTTTGGAACAACTTACCGATGTATCTGGCATAGG
TAAAGCTACGCTTGATAAAAATCGTGATCGCATTGCATTACAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(55-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

61.157

100

0.612
  comE1/comEA Haemophilus influenzae Rd KW20

54.348

76.033

0.413
  comEA Acinetobacter baumannii strain A118

34.615

100

0.372
  comEA Vibrio cholerae C6706

47.312

76.86

0.364
  comEA Vibrio cholerae strain A1552

47.312

76.86

0.364