Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   NYR68_RS10350 Genome accession   NZ_CP103814
Coordinates   2210417..2210782 (-) Length   121 a.a.
NCBI ID   WP_279455955.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 4091     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2205417..2215782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR68_RS10335 (NYR68_10340) - 2206209..2206829 (+) 621 WP_279622270.1 MerR family transcriptional regulator -
  NYR68_RS10340 (NYR68_10345) gshAB 2206921..2209194 (-) 2274 WP_279622271.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -
  NYR68_RS10345 (NYR68_10350) asd 2209345..2210238 (-) 894 WP_279622272.1 archaetidylserine decarboxylase -
  NYR68_RS10350 (NYR68_10355) comEA/comE1 2210417..2210782 (-) 366 WP_279455955.1 ComEA family DNA-binding protein Machinery gene
  NYR68_RS10355 (NYR68_10360) - 2211123..2212499 (+) 1377 WP_279455956.1 LysM-like peptidoglycan-binding domain-containing protein -
  NYR68_RS10360 (NYR68_10365) - 2212573..2213028 (+) 456 WP_279455958.1 MliC family protein -
  NYR68_RS10365 (NYR68_10370) waaF 2213111..2214148 (+) 1038 WP_279622273.1 lipopolysaccharide heptosyltransferase II -
  NYR68_RS10370 (NYR68_10375) rfaC 2214224..2215183 (+) 960 WP_279622274.1 lipopolysaccharide heptosyltransferase RfaC -
  NYR68_RS10375 (NYR68_10380) rpsL 2215307..2215681 (+) 375 WP_005543325.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 12853.75 Da        Isoelectric Point: 10.0523

>NTDB_id=725374 NYR68_RS10350 WP_279455955.1 2210417..2210782(-) (comEA/comE1) [Actinobacillus equuli subsp. haemolyticus strain 4091]
MKTRSKLGLSLLIGMLSTGVLAAEKTKPSVTEPTPVVQNAQATSPEHSHAEMTNNANLVNINIATAAEIQDKLVGIGAKK
AQAIVEYRTKNGAFSSLEQLTDVSGIGKATLDKNRDRILLQ

Nucleotide


Download         Length: 366 bp        

>NTDB_id=725374 NYR68_RS10350 WP_279455955.1 2210417..2210782(-) (comEA/comE1) [Actinobacillus equuli subsp. haemolyticus strain 4091]
ATGAAAACACGTTCAAAACTTGGCTTAAGTCTGTTAATCGGTATGTTATCTACCGGTGTATTAGCTGCTGAAAAAACAAA
GCCTAGCGTCACAGAACCCACTCCCGTGGTTCAAAACGCACAAGCAACCAGCCCTGAACATAGCCATGCTGAAATGACAA
ACAATGCAAATTTAGTCAATATCAATATCGCAACAGCAGCGGAAATCCAAGATAAATTAGTCGGTATTGGCGCTAAAAAA
GCACAAGCAATTGTTGAATACCGTACAAAAAACGGTGCATTTAGTAGCCTAGAGCAACTTACCGATGTATCCGGTATCGG
CAAAGCTACACTGGATAAAAATCGTGATCGCATCCTATTGCAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(55-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

59.504

100

0.595
  comE1/comEA Haemophilus influenzae Rd KW20

51.064

77.686

0.397
  comEA Vibrio cholerae C6706

48.387

76.86

0.372
  comEA Vibrio cholerae strain A1552

48.387

76.86

0.372
  comEA Acinetobacter baumannii strain A118

33.846

100

0.364