Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NYR60_RS02270 Genome accession   NZ_CP103807
Coordinates   481231..482433 (+) Length   400 a.a.
NCBI ID   WP_279467550.1    Uniprot ID   -
Organism   Actinobacillus genomosp. 2 strain CCUG15571     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 476231..487433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR60_RS02245 (NYR60_02245) - 476926..477414 (+) 489 WP_279467546.1 dihydrofolate reductase -
  NYR60_RS02250 (NYR60_02250) - 477539..477772 (+) 234 WP_279467547.1 YgjV family protein -
  NYR60_RS02255 (NYR60_02255) radA 477817..479195 (-) 1379 Protein_440 DNA repair protein RadA -
  NYR60_RS02260 (NYR60_02260) pilA 479387..479827 (+) 441 WP_279467548.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  NYR60_RS02265 (NYR60_02265) pilB 479853..481244 (+) 1392 WP_279467549.1 GspE/PulE family protein Machinery gene
  NYR60_RS02270 (NYR60_02270) pilC 481231..482433 (+) 1203 WP_279467550.1 type II secretion system F family protein Machinery gene
  NYR60_RS02275 (NYR60_02275) - 482460..483104 (+) 645 WP_279467551.1 prepilin peptidase -
  NYR60_RS02280 (NYR60_02280) coaE 483126..483766 (+) 641 Protein_445 dephospho-CoA kinase -
  NYR60_RS02285 (NYR60_02285) yacG 483751..483942 (+) 192 WP_279467552.1 DNA gyrase inhibitor YacG -
  NYR60_RS02290 (NYR60_02290) - 484010..484840 (-) 831 WP_279467553.1 serine hydrolase -
  NYR60_RS02295 (NYR60_02295) - 484921..485958 (-) 1038 WP_279467554.1 glycosyltransferase family 9 protein -

Sequence

Protein


Download         Length: 400 a.a.        Molecular weight: 45748.65 Da        Isoelectric Point: 9.9942

>NTDB_id=725175 NYR60_RS02270 WP_279467550.1 481231..482433(+) (pilC) [Actinobacillus genomosp. 2 strain CCUG15571]
MQKHKVYEFRWKAINRFQQSQIGCFLAETLEEVENKLLKKGYTNIRIQRNFVFSTKPSSENITQVINQLALLLNAAIPLK
QALCMVQENSGNIRLYLWLRELIGLIESGYSLSKGLDKLKLYLVKNEIQLINIGEKSGQLGVILANIAQSRSQTEKLHKK
VKKIMFYPLMTLSISLILSIGMLLFIVPQFIEVYSDKEKVLPLLTSILFSLSVFLQTYGLLIAFAFVVLGTMFIWFAKNS
TFLTAFKWRMFSLLPVFNKVITNSRIVFFSQNLALMLKNHMRLEIALNAFLSAQTQDIQLKKEINMMLTFLRQGYKLSDC
LNPTVFQSQVIQMIAVAERSGSLIQMLEHIGEIYQQKLDYQIDLLSQMIEPILMMMIGLVIGTILIGLYLPIFDMGGLAG

Nucleotide


Download         Length: 1203 bp        

>NTDB_id=725175 NYR60_RS02270 WP_279467550.1 481231..482433(+) (pilC) [Actinobacillus genomosp. 2 strain CCUG15571]
ATGCAGAAGCATAAAGTGTATGAATTTCGCTGGAAAGCAATAAACAGATTTCAGCAATCACAAATAGGATGTTTTCTTGC
AGAAACTCTGGAGGAGGTTGAAAATAAACTTCTTAAAAAAGGTTATACGAATATTCGTATTCAACGTAATTTTGTCTTTT
CGACGAAGCCTTCCTCAGAAAATATTACACAAGTCATCAATCAACTAGCACTATTACTAAATGCCGCAATTCCTCTGAAA
CAAGCCCTTTGTATGGTTCAGGAAAATAGTGGCAATATTCGACTTTATTTATGGCTTCGTGAGTTAATTGGATTAATTGA
GTCGGGATATTCCTTATCAAAGGGGTTAGATAAACTTAAACTTTATTTAGTAAAAAATGAAATACAACTTATTAATATTG
GCGAAAAAAGCGGACAATTAGGCGTGATATTGGCCAATATTGCACAAAGTCGTTCTCAAACAGAAAAGTTACATAAAAAA
GTAAAAAAGATAATGTTTTATCCATTAATGACATTAAGTATTTCCCTAATATTGTCTATCGGAATGTTGTTATTTATTGT
CCCTCAATTTATTGAAGTATATAGCGATAAAGAAAAAGTTCTTCCTTTGCTTACATCCATTCTATTTTCACTATCTGTTT
TTTTGCAAACTTATGGGTTATTGATAGCATTTGCCTTTGTAGTGTTAGGTACTATGTTTATTTGGTTTGCTAAAAACAGT
ACATTTTTAACTGCTTTTAAATGGCGAATGTTTAGTTTATTGCCGGTATTTAATAAGGTTATTACAAATTCGAGAATTGT
TTTTTTTAGTCAAAATTTGGCGTTAATGTTAAAAAATCATATGCGGTTGGAAATTGCATTAAATGCGTTCCTTTCTGCTC
AAACACAAGATATCCAGTTAAAAAAAGAGATAAATATGATGTTAACTTTTTTACGACAAGGCTATAAATTGTCTGACTGT
TTAAATCCAACAGTATTTCAGAGCCAAGTGATTCAAATGATCGCAGTAGCTGAACGAAGTGGTAGTTTGATTCAGATGCT
TGAGCATATAGGAGAAATATATCAACAGAAATTGGATTATCAAATTGATCTACTTTCTCAAATGATTGAGCCTATCTTAA
TGATGATGATTGGTTTAGTGATAGGCACGATTTTAATTGGTCTATATTTACCTATTTTTGATATGGGGGGCTTGGCAGGG
TAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(66-188)

Type II secretion system (T2SS), protein F (T2SSF)

(269-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Glaesserella parasuis strain SC1401

49.242

99

0.487
  pilC Haemophilus influenzae Rd KW20

41.604

99.75

0.415
  pilC Haemophilus influenzae 86-028NP

40.351

99.75

0.403