Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KU43P_RS26070 Genome accession   NZ_AP019365
Coordinates   5688048..5689538 (+) Length   496 a.a.
NCBI ID   WP_317660334.1    Uniprot ID   -
Organism   Pseudomonas sp. KU43P     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5683048..5694538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU43P_RS26050 (KU43P_51210) glnK 5684339..5684677 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  KU43P_RS26055 (KU43P_51220) - 5685042..5685305 (+) 264 WP_317660330.1 accessory factor UbiK family protein -
  KU43P_RS26060 (KU43P_51230) - 5685329..5685757 (+) 429 WP_317660331.1 molybdopterin-binding protein -
  KU43P_RS26065 (KU43P_51240) - 5685770..5687794 (-) 2025 WP_317660332.1 DUF4034 domain-containing protein -
  KU43P_RS26070 (KU43P_51250) comM 5688048..5689538 (+) 1491 WP_317660334.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KU43P_RS26075 (KU43P_51260) - 5689662..5691449 (+) 1788 WP_317660336.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  KU43P_RS26085 (KU43P_51270) ycaC 5691818..5692447 (-) 630 WP_317660337.1 isochorismate family cysteine hydrolase YcaC -
  KU43P_RS26090 (KU43P_51280) - 5692581..5693492 (+) 912 WP_317660338.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52896.65 Da        Isoelectric Point: 7.5585

>NTDB_id=72440 KU43P_RS26070 WP_317660334.1 5688048..5689538(+) (comM) [Pseudomonas sp. KU43P]
MSLALVHSRAQVGVQAPAVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSGLNYPQRRITQNLAPADLPKDGGR
YDLAIALGILAADAQVPVAALVDIECLGELALSGKLRPVQGVLPAALAARESGRALVVPRENAEEASLAGGLVVYAVGHL
LELVAHLNGQVPLPPFAANGLILQSQPYPDLSEVQGQIAAKRALLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGHAPLNSWPQRPFRHPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQIQRYRNKLSGPLLDRIDLHLTVARETTTLNNQPSG
ETSADVAARVATARELQQRRQGCANAFLNLEGLRSHCQLQAADQAWLEIACERLSLSLRAAHRLLKVARTLADLEGAGPI
AREHVAEALQYRPATS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=72440 KU43P_RS26070 WP_317660334.1 5688048..5689538(+) (comM) [Pseudomonas sp. KU43P]
ATGTCTCTTGCCCTCGTCCACAGCCGCGCCCAAGTCGGCGTGCAGGCACCCGCGGTCAGCGTCGAAACCCACCTTGCCAA
TGGTCTGCCACATCTCACACTGGTCGGTTTGCCGGAAACTACCGTCAAGGAAAGCAAGGATCGGGTGCGTAGCGCCATCG
TCAACTCCGGCTTGAACTACCCGCAACGGCGCATTACCCAGAACCTGGCACCTGCCGACCTGCCCAAGGACGGCGGGCGC
TACGACCTGGCCATCGCCCTGGGCATCCTTGCCGCCGACGCACAGGTGCCGGTCGCGGCGTTGGTCGACATCGAATGCCT
TGGCGAACTGGCGCTATCTGGTAAGTTGCGCCCGGTACAGGGCGTACTGCCCGCTGCGCTGGCCGCACGCGAATCAGGCC
GCGCTCTGGTGGTGCCACGTGAGAACGCCGAGGAGGCGAGCCTGGCGGGCGGTCTGGTGGTGTATGCGGTTGGGCATCTG
CTGGAACTGGTGGCGCACTTGAATGGCCAGGTGCCGCTGCCGCCCTTTGCCGCCAATGGCTTGATATTGCAAAGCCAGCC
CTACCCTGATTTGAGCGAGGTCCAAGGGCAGATCGCCGCCAAGCGCGCCTTGCTACTGGCAGCGGCCGGGGCGCACAACC
TGCTGTTTACCGGCCCGCCTGGCACCGGCAAGACCCTGCTCGCCAGCCGCCTGCCCGGCCTGCTGCCGCCACTGGATGAA
CATGAAGCGCTGGAAGTGGCGGCCATCCAGTCGGTCAGTGGGCATGCGCCACTCAACAGCTGGCCGCAACGGCCCTTTCG
CCACCCGCACCACTCGGCCTCGGGCCCCGCGCTGGTGGGCGGCGGCAGCAGGCCGCAGCCCGGAGAAATTACCTTGGCAC
ACCACGGCGTGCTGTTTCTCGACGAGTTACCAGAGTTCGAGCGACGCGTTCTGGAGGTGCTGCGCGAACCGTTGGAGTCC
GGCGAAATCGTGATCGCTCGGGCGCGGGACAAAGTGCGTTTCCCGGCACGTTTCCAATTGGTAGCGGCAATGAACCCCTG
CCCGTGCGGCTACCTCGGTGACCCCACAGGCCGCTGCCGCTGCAGCACCGAGCAGATCCAGCGCTACCGCAACAAGCTGT
CCGGCCCCTTGCTCGACCGCATTGACCTGCACCTGACCGTGGCCCGTGAAACTACCACGCTCAATAACCAGCCCAGCGGG
GAAACCAGTGCCGATGTGGCCGCTCGAGTAGCCACGGCGCGTGAGCTGCAGCAACGGCGACAAGGCTGCGCCAACGCCTT
CCTCAACCTTGAAGGGCTACGCAGCCATTGCCAGCTGCAGGCTGCGGATCAAGCCTGGCTGGAAATCGCCTGCGAACGAT
TGAGCCTTTCCCTGCGCGCGGCACATCGCTTGCTGAAAGTGGCGCGAACGCTGGCTGATCTCGAAGGGGCCGGTCCGATT
GCACGGGAGCATGTGGCCGAAGCGCTGCAGTACCGACCGGCGACGTCTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.847

100

0.558
  comM Haemophilus influenzae Rd KW20

55.4

100

0.558
  comM Vibrio campbellii strain DS40M4

55.645

100

0.556
  comM Glaesserella parasuis strain SC1401

53.586

100

0.542
  comM Legionella pneumophila str. Paris

48.992

100

0.49
  comM Legionella pneumophila strain ERS1305867

48.992

100

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.211

100

0.478

Multiple sequence alignment