Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M5T14_RS01620 Genome accession   NZ_CP103674
Coordinates   342144..342668 (+) Length   174 a.a.
NCBI ID   WP_003860284.1    Uniprot ID   A0A9Q2WCG9
Organism   Enterobacter hormaechei strain 1074     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 337144..347668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5T14_RS01600 (M5T14_01600) aphA 337468..338181 (+) 714 WP_017382626.1 acid phosphatase AphA -
  M5T14_RS01605 (M5T14_01605) - 338294..338710 (+) 417 WP_017382627.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  M5T14_RS01610 (M5T14_01610) - 338713..339066 (+) 354 WP_017382628.1 MmcQ/YjbR family DNA-binding protein -
  M5T14_RS01615 (M5T14_01615) uvrA 339070..341892 (-) 2823 WP_003860287.1 excinuclease ABC subunit UvrA -
  M5T14_RS01620 (M5T14_01620) ssb 342144..342668 (+) 525 WP_003860284.1 single-stranded DNA-binding protein SSB1 Machinery gene
  M5T14_RS01625 (M5T14_01625) - 342730..343011 (-) 282 WP_003860282.1 YjcB family protein -
  M5T14_RS01635 (M5T14_01635) - 343455..344853 (+) 1399 Protein_311 sensor domain-containing diguanylate cyclase -
  M5T14_RS01640 (M5T14_01640) - 345119..346684 (+) 1566 WP_015570189.1 EAL domain-containing protein -
  M5T14_RS01645 (M5T14_01645) soxS 346691..347017 (-) 327 WP_003860277.1 superoxide response transcriptional regulator SoxS -
  M5T14_RS01650 (M5T14_01650) soxR 347116..347574 (+) 459 WP_003860275.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18650.66 Da        Isoelectric Point: 5.2456

>NTDB_id=724028 M5T14_RS01620 WP_003860284.1 342144..342668(+) (ssb) [Enterobacter hormaechei strain 1074]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=724028 M5T14_RS01620 WP_003860284.1 342144..342668(+) (ssb) [Enterobacter hormaechei strain 1074]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGAGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAGTATCTGCGTAAGGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCGGCGCACCAGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGCC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGTGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCGGCACCG
TCTAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.793
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.609
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.374