Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   myaer102_RS04795 Genome accession   NZ_AP019314
Coordinates   954798..955163 (-) Length   121 a.a.
NCBI ID   WP_002798118.1    Uniprot ID   -
Organism   Microcystis viridis NIES-102     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 949798..960163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  myaer102_RS04780 (myaer102_08780) - 950123..951334 (-) 1212 WP_125730425.1 glycosyltransferase -
  myaer102_RS04785 (myaer102_08790) pilJ 951408..954086 (-) 2679 WP_125730426.1 methyl-accepting chemotaxis protein Machinery gene
  myaer102_RS04790 (myaer102_08800) - 954176..954706 (-) 531 WP_002798117.1 chemotaxis protein CheW -
  myaer102_RS04795 (myaer102_08810) pilH 954798..955163 (-) 366 WP_002798118.1 response regulator transcription factor Machinery gene
  myaer102_RS04800 (myaer102_08820) - 956773..958104 (+) 1332 WP_125730427.1 RNA-guided endonuclease InsQ/TnpB family protein -
  myaer102_RS04805 (myaer102_08830) hmpF 958083..959723 (+) 1641 WP_125730428.1 pilus motility taxis protein HmpF -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13879.30 Da        Isoelectric Point: 6.9277

>NTDB_id=72400 myaer102_RS04795 WP_002798118.1 954798..955163(-) (pilH) [Microcystis viridis NIES-102]
MSEILLVEDSQTQRELICDLLRNSGIKVTIATDGVEALEHIQRANPDLVVLDIVMPRMNGYEVCRRLKSDPKTKNVPVVI
CSLKGEVFDRYWGMKIGADAYIVKPFEPIEFIYTIKQLLRR

Nucleotide


Download         Length: 366 bp        

>NTDB_id=72400 myaer102_RS04795 WP_002798118.1 954798..955163(-) (pilH) [Microcystis viridis NIES-102]
ATGAGCGAAATATTGCTGGTAGAAGACAGCCAAACGCAAAGGGAACTGATCTGTGATCTACTCCGCAATAGCGGCATTAA
GGTCACGATCGCCACGGATGGGGTGGAAGCCCTCGAACATATTCAGAGAGCCAATCCGGATCTCGTCGTCCTCGATATCG
TCATGCCCCGCATGAATGGTTATGAGGTGTGTCGTCGTCTCAAGTCGGATCCAAAAACCAAAAATGTCCCGGTGGTGATT
TGTTCCTTGAAAGGGGAAGTCTTTGATCGCTATTGGGGCATGAAAATCGGAGCCGATGCCTACATTGTCAAGCCCTTTGA
ACCGATTGAGTTCATTTATACCATTAAACAACTGTTGCGCCGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

71.667

99.174

0.711
  vicR Streptococcus mutans UA159

37.19

100

0.372
  pilG Acinetobacter baumannii strain A118

39.13

95.041

0.372
  micA Streptococcus pneumoniae Cp1015

36.364

100

0.364

Multiple sequence alignment