Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   myaer102_RS04785 Genome accession   NZ_AP019314
Coordinates   951408..954086 (-) Length   892 a.a.
NCBI ID   WP_125730426.1    Uniprot ID   A0A3G9JKH3
Organism   Microcystis viridis NIES-102     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 946408..959086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  myaer102_RS04775 (myaer102_08770) - 948339..949676 (-) 1338 WP_125730424.1 AAA-like domain-containing protein -
  myaer102_RS04780 (myaer102_08780) - 950123..951334 (-) 1212 WP_125730425.1 glycosyltransferase -
  myaer102_RS04785 (myaer102_08790) pilJ 951408..954086 (-) 2679 WP_125730426.1 methyl-accepting chemotaxis protein Machinery gene
  myaer102_RS04790 (myaer102_08800) - 954176..954706 (-) 531 WP_002798117.1 chemotaxis protein CheW -
  myaer102_RS04795 (myaer102_08810) pilH 954798..955163 (-) 366 WP_002798118.1 response regulator transcription factor Machinery gene
  myaer102_RS04800 (myaer102_08820) - 956773..958104 (+) 1332 WP_125730427.1 RNA-guided endonuclease InsQ/TnpB family protein -

Sequence

Protein


Download         Length: 892 a.a.        Molecular weight: 96911.74 Da        Isoelectric Point: 4.4173

>NTDB_id=72399 myaer102_RS04785 WP_125730426.1 951408..954086(-) (pilJ) [Microcystis viridis NIES-102]
MPSGTEYAKLYRKANTAYCQGNLEDAAVIVKEMISKYPEDANVMLLQGHIHLGLQQYRLAEERYEKVLQLAKNSPTSSDL
VDYAQRGLDQIRQLRFEAEEGDFTIAATESIAYSEAAFDPSQSFNRSRSWKSQGAAPDGQKKGLDWNSSLFNEEDPSEPT
VSKVHSYDDDFEESEETAFSSLTLPGPGSHGSQWSSDSAEGEAPFPFLEAAEIDSLEEGWDGELGSTGEATFMVSSALGG
NPLTGRDQELSYRDTLEESTFAIDLESTHPQGAKTGPNQGRVTQQRDEEDETGDFGQPELNDEDLDGFSPLALTDTVQGL
GDWELFTPSGGEALSGGFLPEPSAHLNASSGVGEPSFNPSRLKTPNDKRDSHLTHASELLLKPVVEVNPGKLGFFVNASL
GKKQLILAALAGITPVIIIFAVSTTSWLSTLLAAKPAPNSQAKTENVAPKPAPKPPASASLSPFSQPVLTMMLLTGLGTL
ALTWLGLQLLISQIKRSLNDLQSQFDHLSEGNFNAKATIYSEDEFGQLANRFNQMARVVVTTTTEAQRRAAETEREREDL
QRQVIRLLDDVEGAARGDLTVEAEVSADVLGAVADAFNLTIQNLREIVRQVKKAAKQVNQGSTNSESFARNQSSDALRMA
EELAVTLNSVQMMTDSIQRVAENAREAEEVARTSSITALKGGDSVERTVAGILQIRETVSETARKVKRLAEASQEISKIV
AVVSQIASRTNLLALNASIQAARAGEAGRGFAVVADEVRQLADRAAKSLKEIEQIVLHIQSETGSVMTAMEEGIQQVIDV
TERSEQAKKSLEDIIQVSNRIDTLVRSITADTVKQRENSLNVAQVMQSVELTAQETSQESQRVAGSLQKLVSISRELLSS
VERFKVDSEDDR

Nucleotide


Download         Length: 2679 bp        

>NTDB_id=72399 myaer102_RS04785 WP_125730426.1 951408..954086(-) (pilJ) [Microcystis viridis NIES-102]
ATGCCGTCAGGGACAGAATACGCAAAACTTTATAGAAAGGCTAACACCGCCTATTGCCAGGGCAACCTTGAGGATGCCGC
CGTCATTGTCAAAGAGATGATCAGCAAGTATCCCGAGGATGCCAATGTCATGCTTTTACAGGGTCACATTCATCTAGGAC
TACAACAATACAGATTGGCGGAGGAACGTTACGAAAAAGTGCTGCAATTGGCTAAAAATTCTCCCACTAGCTCCGATCTA
GTCGATTATGCCCAGCGTGGTCTCGATCAGATTCGGCAATTGCGTTTTGAAGCCGAGGAGGGAGATTTTACGATCGCTGC
TACGGAAAGCATTGCCTACAGCGAGGCAGCTTTCGATCCAAGTCAAAGTTTTAACCGTTCTCGCTCCTGGAAGTCGCAAG
GGGCTGCCCCCGATGGACAAAAAAAAGGGCTGGATTGGAATAGTAGTCTTTTCAATGAGGAGGATCCCAGCGAGCCTACG
GTAAGTAAAGTCCATTCCTATGACGATGATTTTGAGGAATCGGAGGAAACCGCCTTTAGTTCCCTTACCCTGCCGGGCCC
TGGCTCTCACGGTTCCCAGTGGTCTAGCGATTCGGCGGAGGGGGAAGCCCCTTTCCCCTTTTTAGAAGCGGCGGAGATTG
ACTCGCTGGAGGAAGGGTGGGACGGTGAGTTAGGGTCAACGGGAGAAGCCACTTTTATGGTTTCCTCTGCTCTGGGGGGA
AATCCCCTCACCGGTAGAGATCAGGAGTTATCCTATAGGGATACCCTAGAAGAAAGCACTTTTGCCATTGACCTGGAATC
GACCCACCCACAAGGGGCAAAAACTGGCCCTAATCAGGGCAGAGTCACTCAACAAAGAGACGAGGAAGACGAAACCGGAG
ATTTTGGGCAACCAGAACTCAATGATGAGGATTTAGACGGTTTTTCCCCACTGGCTCTGACGGATACGGTTCAAGGACTG
GGGGACTGGGAGCTATTTACCCCTTCGGGGGGGGAAGCTTTAAGTGGTGGTTTTCTCCCCGAACCCAGTGCGCACCTTAA
TGCCAGTTCTGGTGTGGGAGAGCCTAGTTTTAATCCTTCTCGTCTAAAAACCCCCAATGACAAAAGAGATAGTCATCTTA
CCCATGCCTCCGAACTCTTGCTCAAGCCAGTGGTGGAAGTCAATCCGGGCAAATTAGGCTTTTTTGTCAACGCTTCTTTA
GGCAAAAAACAACTAATCCTAGCGGCCTTAGCGGGTATTACCCCTGTGATCATAATTTTTGCCGTTAGTACCACCTCTTG
GCTTTCTACGCTCTTGGCTGCCAAACCAGCCCCGAATAGCCAGGCAAAAACCGAAAATGTTGCCCCCAAACCGGCCCCGA
AACCGCCAGCCTCAGCCAGTCTTTCCCCCTTCAGTCAACCGGTACTAACCATGATGTTATTAACCGGACTGGGAACCCTA
GCCCTGACTTGGCTAGGTTTACAGTTGCTAATTAGTCAGATTAAGCGCAGTCTCAACGATCTGCAAAGCCAATTCGATCA
TCTCTCGGAAGGTAATTTTAACGCTAAAGCGACGATCTACTCGGAAGATGAATTCGGTCAACTGGCCAATCGTTTCAATC
AGATGGCTCGGGTGGTGGTAACTACCACCACGGAAGCCCAACGCCGCGCCGCCGAAACGGAACGGGAACGGGAAGACTTA
CAACGGCAAGTGATTCGACTTCTCGATGATGTGGAAGGAGCGGCTCGGGGAGATCTGACCGTGGAAGCGGAGGTAAGCGC
CGATGTTTTAGGGGCGGTGGCCGATGCTTTTAATTTGACTATCCAAAACCTGCGCGAAATTGTCCGACAGGTGAAAAAAG
CGGCCAAACAGGTGAATCAAGGCAGTACCAATAGTGAATCTTTCGCCCGCAATCAGTCTAGCGATGCCCTGCGGATGGCG
GAGGAATTGGCCGTCACCCTTAATTCGGTACAGATGATGACCGACTCAATTCAACGGGTGGCGGAAAACGCCAGAGAAGC
CGAAGAAGTCGCTCGCACTTCCTCGATTACCGCCCTGAAGGGGGGCGATTCCGTGGAAAGAACCGTGGCGGGAATTCTAC
AAATCCGCGAGACCGTATCAGAAACGGCGCGAAAAGTCAAGCGTTTGGCGGAAGCTTCCCAGGAAATCTCGAAAATTGTC
GCGGTAGTCTCTCAGATTGCCTCACGGACCAATTTATTGGCTCTTAATGCCTCGATTCAAGCGGCGCGAGCAGGAGAGGC
GGGCCGCGGTTTTGCGGTTGTGGCCGATGAGGTGCGTCAGTTGGCCGATAGAGCTGCTAAATCGCTTAAGGAAATTGAAC
AGATCGTTTTACATATCCAATCGGAAACGGGTTCGGTAATGACGGCGATGGAGGAAGGGATTCAACAGGTTATCGATGTC
ACCGAGCGCTCGGAACAGGCGAAGAAGTCCCTAGAAGATATTATCCAAGTTTCTAATCGTATCGATACGCTGGTGCGATC
GATTACCGCCGATACGGTCAAACAACGGGAAAATTCCCTCAATGTCGCCCAAGTTATGCAGTCGGTGGAGTTAACCGCTC
AGGAAACTTCCCAAGAATCCCAACGGGTGGCGGGTTCTCTGCAAAAATTGGTGAGTATCTCCCGGGAGCTGCTTTCTTCG
GTAGAACGGTTTAAGGTAGACTCAGAGGATGATCGATAA

Domains

Predicted by InterproScan.

HAMP domain (HAMP)

(489-537)

Methyl-accepting chemotaxis protein (MCP) signalling domain (MCPsignal)

(669-849)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G9JKH3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Synechocystis sp. PCC 6803

49.892

100

0.519

Multiple sequence alignment