Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   M5S62_RS22755 Genome accession   NZ_CP103611
Coordinates   4767789..4769309 (+) Length   506 a.a.
NCBI ID   WP_251109094.1    Uniprot ID   -
Organism   Enterobacter cloacae strain 3143     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4762789..4774309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5S62_RS22730 (M5S62_22730) ilvE 4764355..4765284 (-) 930 WP_013099287.1 branched-chain-amino-acid transaminase -
  M5S62_RS22735 (M5S62_22735) ilvM 4765303..4765566 (-) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  M5S62_RS22740 (M5S62_22740) ilvG 4765563..4767209 (-) 1647 WP_129327933.1 acetolactate synthase 2 catalytic subunit -
  M5S62_RS22745 (M5S62_22745) ilvX 4767212..4767262 (-) 51 WP_102046757.1 peptide IlvX -
  M5S62_RS22750 (M5S62_22750) ilvL 4767349..4767447 (-) 99 WP_023620831.1 ilv operon leader peptide -
  M5S62_RS22755 (M5S62_22755) comM 4767789..4769309 (+) 1521 WP_251109094.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  M5S62_RS22760 (M5S62_22760) - 4769342..4769680 (-) 339 WP_013099290.1 DUF413 domain-containing protein -
  M5S62_RS22765 (M5S62_22765) hdfR 4769799..4770620 (+) 822 WP_020685959.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54967.92 Da        Isoelectric Point: 7.1231

>NTDB_id=723686 M5S62_RS22755 WP_251109094.1 4767789..4769309(+) (comM) [Enterobacter cloacae strain 3143]
MSLSVVYTRAAIGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTARLGSYEFIGELALTGALRGVPGAISGALEAIHAGRQIIVAKENASEVSLIAEKGCLVAGHL
QEVCAHLEGRHTLSEPEETGDILPESPDDLSDIIGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLNGLLPPLNNH
EALESAAIFSLVSSASLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPSGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLSQTTIRG
ESTANVRERVIASQARQYARQHKLNARLDNAEIRQFCHLKAEDACWLEETLTRFGLSIRAWQRLLKVARTIADVEGDPEI
ERHHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=723686 M5S62_RS22755 WP_251109094.1 4767789..4769309(+) (comM) [Enterobacter cloacae strain 3143]
ATGTCACTGTCAGTTGTTTACACGCGTGCGGCGATCGGAGTAAAGGCACCGCTTATTTCTGTGGAGGTTCATCTGAGTAA
TGGGCTCCCTGGGCTAACGCTTGTCGGCTTGCCAGAAACCACGGTCAAAGAAGCCAGAGATCGGGTTCGCAGCGCAATTA
TCAATAGCGGTTATACCTTCCCCGCAAAGAAGATTACGATCAATCTTGCCCCCGCGGATCTGCCCAAGGAGGGCGGACGA
TACGATTTACCTATCGCTATTGCGCTTCTCGCAGCCTCTGAGCAGCTCAACACAGCGAGGCTAGGCTCGTACGAGTTCAT
TGGCGAACTGGCGCTTACAGGCGCGTTAAGAGGCGTTCCTGGCGCCATCTCTGGTGCGCTGGAAGCCATTCATGCCGGTC
GACAAATTATTGTAGCCAAAGAAAATGCCTCAGAAGTGAGCCTGATTGCCGAGAAAGGATGCCTGGTCGCGGGGCATTTA
CAGGAAGTCTGCGCGCACCTTGAAGGCCGACATACGCTCTCCGAGCCAGAGGAAACCGGAGATATCCTGCCTGAAAGCCC
GGACGACCTCAGCGATATTATCGGGCAGGAGCAGGGGAAGCGGGCACTGGAGATCACCGCAGCCGGAGGACATAACCTGT
TGCTGATTGGCCCGCCGGGAACAGGGAAAACCATGCTGGCGAGCAGGCTGAATGGGTTATTGCCACCACTCAATAATCAT
GAGGCACTTGAAAGCGCAGCGATATTTAGCCTGGTGAGCTCTGCATCATTGCAAAAACAGTGGCGACGACGCCCTTTTCG
CTCTCCCCATCACAGTGCCTCCCTGACGGCCATGGTCGGAGGGGGCTCCATTCCGGGGCCGGGAGAGATCTCGCTGGCAC
ACAATGGCATCCTGTTCCTTGATGAACTGCCTGAGTTTGAACGCCGCGTACTGGATGCCCTGCGGGAACCTATCGAATCT
GGCGAGATCCATATCTCCCGCACGCGCGCCAAAATAAGCTACCCGGCACAGTTCCAGCTGGTTGCTGCCATGAACCCCAG
CCCATCAGGCCATTATCAGGGGAATCATAATCGCTGCACGCCTGAGCAGACGCTGCGCTATCTGGGGAAGCTGTCAGGCC
CTTTCCTCGATCGTTTTGATTTATCCCTGGAGATCCCCTTACCTCCCCCAGGTTTGCTCAGCCAGACAACGATACGCGGT
GAGAGCACAGCGAATGTTCGCGAACGGGTTATCGCCTCACAGGCCCGACAGTACGCTCGTCAACATAAGCTGAATGCGCG
TCTGGATAATGCTGAGATTCGGCAGTTTTGCCATCTTAAGGCTGAGGATGCCTGCTGGCTTGAAGAGACATTGACGCGAT
TTGGGCTCTCGATCCGTGCATGGCAGCGCCTGCTGAAAGTGGCTCGCACTATTGCCGATGTGGAAGGAGACCCAGAGATT
GAAAGACACCATCTGCAGGAAGCGCTGAGCTATCGCGCCATAGATCGGTTGTTGCTGCACCTGCAAAAATTACTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.984

100

0.597
  comM Glaesserella parasuis strain SC1401

59.172

100

0.593
  comM Vibrio campbellii strain DS40M4

59.524

99.605

0.593
  comM Vibrio cholerae strain A1552

59.761

99.209

0.593
  comM Legionella pneumophila str. Paris

50.101

98.221

0.492
  comM Legionella pneumophila strain ERS1305867

50.101

98.221

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.181

100

0.443