Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NRD65_RS01645 Genome accession   NZ_CP103409
Coordinates   341379..341909 (+) Length   176 a.a.
NCBI ID   WP_110292859.1    Uniprot ID   -
Organism   Enterobacter hormaechei strain EHA64     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 336379..346909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRD65_RS01625 (NRD65_01620) aphA 336703..337416 (+) 714 WP_110292860.1 acid phosphatase AphA -
  NRD65_RS01630 (NRD65_01625) - 337529..337945 (+) 417 WP_017382627.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  NRD65_RS01635 (NRD65_01630) - 337948..338301 (+) 354 WP_017382628.1 MmcQ/YjbR family DNA-binding protein -
  NRD65_RS01640 (NRD65_01635) uvrA 338305..341127 (-) 2823 WP_015570187.1 excinuclease ABC subunit UvrA -
  NRD65_RS01645 (NRD65_01640) ssb 341379..341909 (+) 531 WP_110292859.1 single-stranded DNA-binding protein SSB1 Machinery gene
  NRD65_RS01650 (NRD65_01645) - 341971..342252 (-) 282 WP_003860282.1 YjcB family protein -
  NRD65_RS01655 (NRD65_01650) - 342696..344096 (+) 1401 WP_032103688.1 sensor domain-containing diguanylate cyclase -
  NRD65_RS01660 (NRD65_01655) - 344362..345927 (+) 1566 WP_015570189.1 EAL domain-containing protein -
  NRD65_RS01665 (NRD65_01660) soxS 345934..346260 (-) 327 WP_003860277.1 superoxide response transcriptional regulator SoxS -
  NRD65_RS01670 (NRD65_01665) soxR 346359..346817 (+) 459 WP_003860275.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18863.89 Da        Isoelectric Point: 5.2456

>NTDB_id=722574 NRD65_RS01645 WP_110292859.1 341379..341909(+) (ssb) [Enterobacter hormaechei strain EHA64]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQNQQQGGWGQPQQPQGGNQFSGGVQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=722574 NRD65_RS01645 WP_110292859.1 341379..341909(+) (ssb) [Enterobacter hormaechei strain EHA64]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGAGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGACCAATCCGGCGCTGAGAAGTACACCACGGAAGTGGTGGTGAATGTGGG
CGGCACCATGCAAATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCGGCAGGTGGCGGTCAGAATCAGCAGCAGGGTGGTT
GGGGTCAGCCTCAGCAGCCTCAGGGCGGCAACCAGTTCAGCGGCGGCGTGCAGTCCCGTCCGCAGCAGCAGTCTGCTCCG
GCACCGTCTAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.784
  ssb Glaesserella parasuis strain SC1401

56.216

100

0.591
  ssb Neisseria meningitidis MC58

46.067

100

0.466
  ssb Neisseria gonorrhoeae MS11

46.067

100

0.466
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.364