Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NVV71_RS01025 Genome accession   NZ_CP103399
Coordinates   153630..154169 (-) Length   179 a.a.
NCBI ID   WP_003759533.1    Uniprot ID   A0A6B0JGK2
Organism   Listeria innocua strain F6215     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 148630..159169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NVV71_RS00995 (NVV71_00995) - 149427..150155 (-) 729 WP_003759538.1 LytTR family DNA-binding domain-containing protein -
  NVV71_RS01000 (NVV71_01000) - 150174..151469 (-) 1296 WP_010990170.1 sensor histidine kinase -
  NVV71_RS01005 (NVV71_01005) - 151565..151726 (-) 162 WP_003721672.1 cyclic lactone autoinducer peptide -
  NVV71_RS01010 (NVV71_01010) - 151710..152324 (-) 615 WP_070752095.1 accessory gene regulator ArgB-like protein -
  NVV71_RS01015 (NVV71_01015) - 152580..153191 (-) 612 WP_070752097.1 PepSY domain-containing protein -
  NVV71_RS01020 (NVV71_01020) rpsR 153347..153586 (-) 240 WP_003721669.1 30S ribosomal protein S18 -
  NVV71_RS01025 (NVV71_01025) ssbA 153630..154169 (-) 540 WP_003759533.1 single-stranded DNA-binding protein Machinery gene
  NVV71_RS01030 (NVV71_01030) rpsF 154225..154518 (-) 294 WP_003718123.1 30S ribosomal protein S6 -
  NVV71_RS01035 (NVV71_01035) arcA 154798..156030 (-) 1233 WP_077957549.1 arginine deiminase -
  NVV71_RS01040 (NVV71_01040) - 156168..157076 (-) 909 WP_070752101.1 hypothetical protein -
  NVV71_RS01045 (NVV71_01045) - 157218..157877 (-) 660 WP_003721665.1 DedA family protein -
  NVV71_RS01050 (NVV71_01050) - 158081..159166 (-) 1086 WP_070752103.1 SIS domain-containing protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19604.25 Da        Isoelectric Point: 4.7306

>NTDB_id=722472 NVV71_RS01025 WP_003759533.1 153630..154169(-) (ssbA) [Listeria innocua strain F6215]
MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRTFTNQQGEREADFINCVVWRKPAENVANFLKKGSMAGVDGRVQTR
NYEGNDGKRVYVTEIVAESVQFLEPRNSNGGGGNNNYQGGNNNNNYNNGGNNFGQAPTNNGGFGQDQQQSQNQNYQSTNN
DPFASDGKPIDISDDDLPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=722472 NVV71_RS01025 WP_003759533.1 153630..154169(-) (ssbA) [Listeria innocua strain F6215]
ATGATGAATCGTGTAGTACTTGTAGGACGCTTAACAAAGGATCCTGAATTACGTTACACTCCAGCTGGTGTGGCCGTTGC
GACTTTTACCTTAGCTGTAAATCGTACGTTCACTAACCAACAGGGAGAACGAGAAGCTGACTTTATTAATTGTGTTGTTT
GGCGTAAACCAGCAGAAAACGTTGCTAATTTCCTGAAGAAGGGAAGCATGGCAGGCGTTGATGGCCGGGTTCAAACTCGT
AATTACGAGGGAAACGATGGCAAACGTGTTTATGTGACAGAAATTGTAGCTGAGAGTGTTCAATTCCTTGAGCCGCGCAA
TTCTAATGGCGGTGGCGGAAATAATAACTATCAAGGCGGAAATAACAACAATAATTATAATAACGGTGGAAATAACTTCG
GACAAGCACCTACTAATAACGGTGGATTCGGACAGGACCAGCAACAATCTCAAAATCAAAATTATCAATCCACTAACAAT
GATCCTTTTGCAAGTGATGGTAAGCCAATCGACATTTCTGATGACGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6B0JGK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

67.039

100

0.67
  ssb Latilactobacillus sakei subsp. sakei 23K

54.645

100

0.559
  ssb Vibrio cholerae strain A1552

33.673

100

0.369
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

59.218

0.363
  ssb Glaesserella parasuis strain SC1401

34.946

100

0.363