Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NX761_RS14135 Genome accession   NZ_CP103306
Coordinates   2968460..2969971 (-) Length   503 a.a.
NCBI ID   WP_046850608.1    Uniprot ID   A0A0F7KDG1
Organism   Nitrosomonas sp. PLL12     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2963460..2974971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX761_RS14105 (NX761_14105) hemE 2963940..2965007 (-) 1068 WP_046850602.1 uroporphyrinogen decarboxylase -
  NX761_RS14110 (NX761_14110) rpsF 2965379..2965807 (+) 429 WP_046850603.1 30S ribosomal protein S6 -
  NX761_RS14115 (NX761_14115) priB 2965822..2966118 (+) 297 WP_046850604.1 primosomal replication protein N -
  NX761_RS14120 (NX761_14120) rpsR 2966154..2966432 (+) 279 WP_046850605.1 30S ribosomal protein S18 -
  NX761_RS14125 (NX761_14125) rplI 2966451..2966906 (+) 456 WP_046850606.1 50S ribosomal protein L9 -
  NX761_RS14130 (NX761_14130) dnaB 2967016..2968410 (+) 1395 WP_046850607.1 replicative DNA helicase -
  NX761_RS14135 (NX761_14135) comM 2968460..2969971 (-) 1512 WP_046850608.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NX761_RS14140 (NX761_14140) - 2970082..2970417 (-) 336 WP_082110464.1 accessory factor UbiK family protein -
  NX761_RS14145 (NX761_14145) - 2970596..2971606 (+) 1011 WP_046850609.1 aminoglycoside phosphotransferase family protein -
  NX761_RS14150 (NX761_14150) murU 2971610..2972335 (+) 726 WP_046850610.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  NX761_RS14155 (NX761_14155) - 2972598..2973392 (+) 795 WP_046850611.1 RNA methyltransferase -
  NX761_RS14160 (NX761_14160) - 2973425..2974324 (+) 900 WP_258920436.1 DNA-3-methyladenine glycosylase -
  NX761_RS14165 (NX761_14165) - 2974328..2974819 (+) 492 WP_046850612.1 methylated-DNA--[protein]-cysteine S-methyltransferase -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 55184.15 Da        Isoelectric Point: 8.5740

>NTDB_id=721849 NX761_RS14135 WP_046850608.1 2968460..2969971(-) (comM) [Nitrosomonas sp. PLL12]
MSLAILYSRALSGIEAPLVTVETHLSNGLPSFTIVGLPETEVKESKDRVRAALQNGRFKFPTQRITVNLAPADLPKESGR
FDLPIALGILAATGQIPANKLDQYEWVGELSLSGELRPIHGALAMTYGASRSGRNFVLPQHNAAEASLVREACVYPATSL
LQICAHLTGHELLQPHTIPAETTFSQANSNYHPDLTEVKGQVHAKRALEIAAAGGHSLLMIGPPGTGKSMLAERLPGILP
TMTEQEALESAAMQSLANGYFDVANWKHRPFRSPHHTASAVAMVGGGSIPRPGEISLAMHGVLFLDELPEFDRRVLEVLR
EPLESGQITISRATRQANFPARFQLIAAMNPCPCGYLGHYGGKCRCTPDQIARYRGKISGPLLDRIDMQIEVPAVPKKDL
LQQETGESSRIIRARVEAARQYQLVRQNGTNAGLRVHEIDHHCQLDEQGKQLLERAFSRLNISARAYHRILKLARTIADL
ARSEQINSGHIAEAIQYRRLDRN

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=721849 NX761_RS14135 WP_046850608.1 2968460..2969971(-) (comM) [Nitrosomonas sp. PLL12]
ATGTCACTGGCTATCCTTTATAGTCGCGCACTATCAGGTATCGAAGCACCACTGGTTACGGTAGAAACTCATTTATCTAA
TGGTTTACCCAGCTTCACGATTGTTGGATTACCTGAAACGGAAGTAAAGGAAAGTAAAGACAGGGTACGTGCTGCGCTAC
AAAATGGGCGATTTAAATTTCCGACACAGCGGATCACGGTCAATCTTGCACCAGCAGATTTGCCCAAGGAGAGTGGCCGA
TTTGATTTGCCTATTGCACTGGGTATTCTTGCGGCAACGGGTCAAATACCTGCTAATAAACTTGATCAGTATGAATGGGT
AGGTGAACTTTCTTTAAGTGGGGAATTGCGTCCTATCCATGGGGCATTAGCCATGACCTATGGTGCGTCACGATCAGGAC
GTAATTTTGTCCTGCCGCAACATAATGCTGCAGAAGCTTCCCTGGTTAGAGAAGCATGCGTTTATCCAGCGACATCATTA
CTTCAGATCTGTGCGCATCTAACCGGACATGAATTATTGCAGCCGCACACAATACCTGCTGAAACAACTTTCAGTCAGGC
TAATTCAAATTATCACCCAGATCTGACTGAAGTAAAAGGTCAGGTGCATGCTAAGCGTGCCTTGGAGATTGCCGCAGCTG
GGGGTCATAGTCTATTGATGATTGGGCCGCCAGGAACAGGCAAGTCGATGCTGGCTGAACGTCTTCCGGGTATTCTTCCT
ACTATGACAGAGCAAGAAGCGCTTGAGTCTGCTGCCATGCAGTCGCTTGCCAACGGTTACTTCGATGTTGCAAATTGGAA
ACATCGTCCTTTCCGCTCACCTCATCACACTGCCTCTGCGGTAGCCATGGTAGGGGGTGGTAGTATTCCTCGCCCAGGAG
AAATTTCCTTGGCAATGCACGGGGTGTTATTTCTCGATGAGCTGCCAGAATTTGATCGTAGAGTCTTGGAGGTGCTGCGT
GAGCCACTTGAATCGGGCCAAATAACTATTTCACGGGCAACACGGCAAGCAAATTTTCCGGCACGGTTTCAGCTAATTGC
TGCAATGAATCCATGCCCTTGTGGTTATTTAGGTCATTATGGAGGGAAATGCCGCTGCACACCTGATCAGATAGCGCGCT
ATCGTGGAAAAATTTCTGGCCCTTTGCTTGATCGTATCGATATGCAGATAGAGGTGCCCGCTGTGCCGAAAAAGGATTTG
CTGCAGCAAGAAACAGGTGAGTCAAGTCGGATAATAAGAGCACGAGTCGAAGCCGCCCGCCAATATCAACTCGTGCGACA
GAATGGTACCAATGCTGGTTTGAGGGTACATGAAATAGATCATCATTGCCAGTTGGATGAGCAGGGTAAACAGTTGCTGG
AGCGTGCATTTTCCCGCTTAAATATTTCTGCACGGGCATACCATCGTATCTTGAAACTGGCGCGAACTATCGCAGATTTA
GCAAGGAGTGAGCAGATTAACAGTGGACATATTGCAGAAGCCATACAATATCGGCGACTCGATCGGAATTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-399)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F7KDG1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55.05

100

0.553
  comM Glaesserella parasuis strain SC1401

54.528

100

0.551
  comM Vibrio cholerae strain A1552

54.96

100

0.551
  comM Vibrio campbellii strain DS40M4

54.473

100

0.545
  comM Legionella pneumophila str. Paris

50.499

99.602

0.503
  comM Legionella pneumophila strain ERS1305867

50.499

99.602

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.929

100

0.483