Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NX720_RS17510 Genome accession   NZ_CP103300
Coordinates   4356595..4357659 (+) Length   354 a.a.
NCBI ID   WP_262596290.1    Uniprot ID   -
Organism   Endozoicomonas euniceicola strain EF212     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4351595..4362659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX720_RS17500 (NX720_17500) - 4352416..4353666 (+) 1251 WP_262596286.1 malic enzyme-like NAD(P)-binding protein -
  NX720_RS17505 (NX720_17505) - 4353774..4356293 (-) 2520 WP_262596288.1 penicillin-binding protein 1A -
  NX720_RS17510 (NX720_17510) comM 4356595..4357659 (+) 1065 WP_262596290.1 pilus assembly protein PilM Machinery gene
  NX720_RS17515 (NX720_17515) - 4357659..4358225 (+) 567 WP_262596292.1 PilN domain-containing protein -
  NX720_RS17520 (NX720_17520) - 4358222..4358836 (+) 615 WP_262596294.1 type 4a pilus biogenesis protein PilO -
  NX720_RS17525 (NX720_17525) - 4358833..4359357 (+) 525 WP_262596295.1 pilus assembly protein PilP -
  NX720_RS17530 (NX720_17530) pilQ 4359481..4361580 (+) 2100 WP_262596297.1 type IV pilus secretin PilQ Machinery gene
  NX720_RS17535 (NX720_17535) aroK 4361706..4362221 (+) 516 WP_262596300.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37965.97 Da        Isoelectric Point: 4.2556

>NTDB_id=721821 NX720_RS17510 WP_262596290.1 4356595..4357659(+) (comM) [Endozoicomonas euniceicola strain EF212]
MLGLFKNKSSSVLGIDISSTSVKVLELSRSGDKYRVEAFGEQPLAPGAVVENNIQETEAVGEAIAKAVAHSRSGVKNAAI
AVSGSAVITKTIEMDASLSDDEMESQIAVEADQYIPYALDEVAIDFEVLGLKEKNPERAEVLLAACRRDNVELRETALEA
AGLKAKVVDVEAFAMERIFELLEDVLELPEDDPVVAIIDIGASNTSLNVLSKGQNIYTREQLFGGRQLTDEIQRRYGLEP
EEAEQAKCKGGLPGDYESEVLEPFKEAVIQQVSRSLQFFYSATRFNDVDAIILAGGSSSLNGLAALMQDKLGTQTIVANP
FAKMSVAGKVDASRLASNAPALAIACGLAMRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=721821 NX720_RS17510 WP_262596290.1 4356595..4357659(+) (comM) [Endozoicomonas euniceicola strain EF212]
GTGTTAGGACTGTTCAAAAATAAATCCAGCTCTGTCCTGGGCATCGATATCAGTTCGACGTCTGTTAAAGTTCTTGAACT
CAGCCGCAGTGGTGATAAGTACCGTGTTGAAGCCTTTGGTGAGCAACCTCTGGCACCGGGTGCTGTCGTCGAAAATAATA
TTCAGGAAACAGAAGCGGTGGGTGAAGCCATTGCCAAAGCCGTTGCCCATTCCCGTTCTGGTGTTAAAAACGCGGCTATT
GCGGTATCCGGTTCAGCAGTGATCACAAAAACCATTGAAATGGACGCTTCTCTCAGTGATGACGAGATGGAATCCCAGAT
TGCGGTAGAGGCAGACCAGTACATTCCCTACGCACTGGACGAAGTGGCTATTGATTTTGAAGTGCTGGGCCTTAAAGAAA
AAAATCCGGAGCGTGCTGAAGTGCTGCTGGCAGCCTGCCGCCGGGATAATGTTGAGCTGCGCGAGACAGCGCTGGAAGCG
GCTGGTTTGAAAGCAAAGGTGGTGGATGTTGAAGCGTTTGCCATGGAGCGTATTTTTGAATTGCTGGAAGATGTACTGGA
GTTGCCGGAAGATGATCCGGTAGTGGCCATTATCGATATTGGTGCCAGCAACACTTCCCTTAATGTCCTCAGTAAAGGTC
AGAATATTTACACCCGTGAACAGTTGTTTGGTGGCCGTCAACTGACGGATGAGATTCAGAGAAGGTATGGGCTGGAGCCT
GAGGAAGCGGAACAGGCCAAATGTAAGGGCGGATTGCCCGGAGATTATGAATCTGAAGTGCTGGAACCTTTTAAGGAAGC
CGTTATCCAGCAGGTTTCCCGCTCCCTTCAGTTCTTTTACTCTGCCACCCGGTTTAATGATGTTGACGCCATCATTCTTG
CAGGCGGCTCCTCTTCCCTGAACGGTCTTGCGGCTTTGATGCAGGACAAGCTGGGTACGCAAACCATTGTTGCCAACCCA
TTCGCAAAAATGTCAGTAGCCGGAAAAGTGGATGCCAGCCGACTGGCTTCTAACGCTCCGGCGCTTGCTATTGCCTGCGG
GTTAGCCATGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

52.26

100

0.523
  pilM Acinetobacter baumannii D1279779

51.977

100

0.52
  comM Acinetobacter baylyi ADP1

50

100

0.5
  pilM Legionella pneumophila strain ERS1305867

45.763

100

0.458