Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   NX720_RS17530 Genome accession   NZ_CP103300
Coordinates   4359481..4361580 (+) Length   699 a.a.
NCBI ID   WP_262596297.1    Uniprot ID   -
Organism   Endozoicomonas euniceicola strain EF212     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4354481..4366580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX720_RS17510 (NX720_17510) comM 4356595..4357659 (+) 1065 WP_262596290.1 pilus assembly protein PilM Machinery gene
  NX720_RS17515 (NX720_17515) - 4357659..4358225 (+) 567 WP_262596292.1 PilN domain-containing protein -
  NX720_RS17520 (NX720_17520) - 4358222..4358836 (+) 615 WP_262596294.1 type 4a pilus biogenesis protein PilO -
  NX720_RS17525 (NX720_17525) - 4358833..4359357 (+) 525 WP_262596295.1 pilus assembly protein PilP -
  NX720_RS17530 (NX720_17530) pilQ 4359481..4361580 (+) 2100 WP_262596297.1 type IV pilus secretin PilQ Machinery gene
  NX720_RS17535 (NX720_17535) aroK 4361706..4362221 (+) 516 WP_262596300.1 shikimate kinase AroK -
  NX720_RS17540 (NX720_17540) aroB 4362230..4363312 (+) 1083 WP_262601604.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 699 a.a.        Molecular weight: 75043.08 Da        Isoelectric Point: 4.7828

>NTDB_id=721822 NX720_RS17530 WP_262596297.1 4359481..4361580(+) (pilQ) [Endozoicomonas euniceicola strain EF212]
MNTKPVVQTSAAILLFVLLAWMPTSVWAVTLKKMDAGSLPGGMVELKLTFDGPAPQAKGYSVDQPPRISIDLPYTRSTLA
KYNEIGFDNAHSVTVLEAGDRTRLVVNLRSPTSFSTKKDGSTLYVYLGADSQQRAYSDDPGLSPMVAESGAPMAEPGGRG
ITHIDFQRGEEGEGNVVITLANADIPMDMNEMAGRIRLEFQGNVLPGRLRNRLDVMDFATPVKYIDAKTEDGNAVVIIEP
KGEFDYLAYQADNVVTVSVKPASFQNYNRGRRGLSYKGDKLSLNFQDIKVREVLQLIADFTDLNLVASDTVTGNVTLRLQ
NVPWDQALDIVLKAKGLDKRQEGNVLTVAPAEEIAARERQQLENDKQIRELAPVYTDLIQINYADASEISDVLSGGGDDS
GLLTDRGSVQVVARTNSLLVKDTQEKLDEIRALITRLDIPVQQVMIEARIVNINSNYSRELGVKWSGGKKLTPGQSNRAI
GIGGNGTNAGLGSGDSDPSSGVGDKPFVDFGVTGTNAASLAIGFATNSTILNLELSAILSDGGGEAVSQPKVITADKTMA
VIKAGKEIPYEEKTSSGATSVAFKDAVLSLEVTPQITPEGSIIMDVKVTNDSEGDPAPNGVPTINKNEVNTQVLVKDGAT
VVLGGVFTQSKNNTTAKVPLLGDIPYVGALFRKKTNKDTKAELMIFITPRIINENVALR

Nucleotide


Download         Length: 2100 bp        

>NTDB_id=721822 NX720_RS17530 WP_262596297.1 4359481..4361580(+) (pilQ) [Endozoicomonas euniceicola strain EF212]
ATGAATACAAAGCCCGTTGTGCAGACTTCGGCAGCCATACTGCTGTTTGTTTTGCTGGCATGGATGCCAACTTCGGTCTG
GGCCGTTACCCTTAAAAAAATGGATGCAGGCTCCCTGCCGGGTGGTATGGTTGAGCTGAAGCTGACGTTCGACGGGCCTG
CACCTCAGGCCAAAGGCTATAGCGTTGACCAACCGCCAAGAATATCCATCGATTTGCCTTATACCCGCAGCACACTAGCC
AAATACAATGAAATCGGTTTTGATAACGCCCATAGTGTCACGGTTCTGGAAGCGGGCGACCGTACCCGCCTGGTTGTGAA
CCTGCGTAGTCCTACCAGTTTTTCCACCAAAAAAGATGGCAGTACCCTTTACGTTTATCTCGGGGCGGACAGCCAGCAGA
GGGCTTATTCCGACGATCCGGGGTTATCCCCTATGGTGGCAGAATCGGGTGCGCCGATGGCAGAACCCGGTGGCAGAGGA
ATTACCCATATTGACTTTCAGCGTGGTGAAGAAGGCGAGGGTAATGTGGTGATTACCCTCGCCAATGCTGATATCCCTAT
GGACATGAATGAAATGGCCGGGCGCATTCGTCTGGAGTTTCAGGGCAATGTATTGCCCGGGCGCTTAAGAAACCGTCTGG
ATGTTATGGATTTTGCTACGCCGGTGAAATATATCGACGCCAAAACCGAAGACGGCAATGCGGTTGTTATTATTGAGCCA
AAGGGCGAGTTCGATTATCTCGCCTATCAGGCAGATAATGTTGTGACGGTCAGTGTTAAGCCTGCTAGCTTCCAGAATTA
TAACCGTGGCCGTCGTGGCCTTTCTTATAAAGGTGACAAGCTTTCCCTGAACTTTCAGGACATCAAGGTGCGTGAAGTAT
TGCAGCTGATTGCAGATTTCACTGACCTGAACCTTGTGGCTTCGGATACCGTCACCGGCAATGTGACCCTGAGGTTGCAG
AATGTTCCATGGGACCAGGCCCTGGATATTGTGCTCAAGGCCAAAGGGCTGGATAAGCGTCAGGAGGGTAATGTGCTGAC
GGTGGCTCCGGCAGAAGAGATTGCCGCCAGAGAGCGTCAGCAGCTGGAGAACGACAAGCAGATTCGTGAGCTGGCACCTG
TCTATACCGATCTGATTCAGATTAACTACGCGGATGCGAGCGAAATTTCTGACGTACTGTCTGGAGGCGGTGACGATTCA
GGCTTGTTGACTGACCGGGGTTCGGTTCAGGTGGTAGCCAGAACCAACAGCCTGCTGGTGAAGGACACCCAGGAAAAACT
GGATGAGATACGGGCGCTGATTACCCGACTGGACATTCCGGTTCAACAGGTGATGATTGAAGCGCGTATTGTCAATATAA
ACTCCAATTACTCCCGTGAGCTTGGGGTGAAGTGGAGTGGTGGTAAAAAATTGACGCCAGGACAGTCAAACCGGGCAATA
GGTATTGGTGGTAATGGAACTAATGCAGGTTTGGGAAGTGGTGATAGTGATCCGTCAAGTGGTGTAGGTGATAAACCGTT
TGTTGATTTTGGGGTGACGGGCACCAATGCCGCCAGCCTGGCCATTGGCTTTGCTACCAACAGCACCATACTCAATCTGG
AACTGTCAGCGATTCTTTCTGACGGTGGTGGTGAGGCCGTGTCCCAGCCCAAGGTTATTACTGCTGATAAAACCATGGCC
GTTATCAAGGCAGGTAAAGAGATACCTTATGAAGAAAAGACCTCAAGTGGCGCCACTTCTGTTGCTTTTAAAGATGCCGT
TTTGTCACTGGAGGTAACACCCCAGATTACGCCTGAAGGCAGTATTATTATGGACGTAAAAGTGACCAACGACTCCGAAG
GCGACCCTGCTCCTAATGGTGTGCCAACCATTAATAAAAATGAGGTCAATACCCAGGTGCTGGTGAAAGATGGCGCCACC
GTTGTTTTGGGTGGAGTGTTCACCCAAAGTAAAAACAACACTACTGCAAAAGTGCCATTGCTGGGTGATATTCCTTATGT
TGGGGCTTTGTTCAGAAAAAAGACTAACAAAGATACCAAGGCAGAGCTGATGATCTTTATTACTCCCCGTATTATTAACG
AGAATGTCGCTCTGCGCTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(540-692)

Secretin and TonB N terminus short domain (STN)

(304-350)

Bacterial type II/III secretion system short domain (Secretin_N)

(378-443)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

51.076

99.714

0.509
  comQ Acinetobacter baylyi ADP1

41.16

100

0.416
  pilQ Acinetobacter baumannii strain A118

39.612

100

0.409
  pilQ Acinetobacter baumannii D1279779

39.612

100

0.409