Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   PUV55_RS04925 Genome accession   NZ_CP118165
Coordinates   1014641..1015903 (-) Length   420 a.a.
NCBI ID   WP_010785953.1    Uniprot ID   -
Organism   Glaesserella parasuis strain XP11     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1009641..1020903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUV55_RS04890 (PUV55_04890) - 1009655..1010074 (+) 420 WP_005714137.1 hotdog fold thioesterase -
  PUV55_RS12465 - 1010511..1011161 (-) 651 WP_420797825.1 IS256 family transposase, variant Zn-binding type -
  PUV55_RS04900 (PUV55_04900) trxA 1011457..1011771 (-) 315 WP_005712493.1 thioredoxin -
  PUV55_RS04905 (PUV55_04905) - 1012068..1012697 (-) 630 WP_010785950.1 LysE family transporter -
  PUV55_RS04910 (PUV55_04910) - 1012699..1013169 (-) 471 WP_005712497.1 phosphatidylglycerophosphatase A -
  PUV55_RS04915 (PUV55_04915) thiL 1013172..1014140 (-) 969 WP_021110497.1 thiamine-phosphate kinase -
  PUV55_RS04920 (PUV55_04920) nusB 1014149..1014562 (-) 414 WP_005712500.1 transcription antitermination factor NusB -
  PUV55_RS04925 (PUV55_04925) comE 1014641..1015903 (-) 1263 WP_010785953.1 type IV pilus secretin PilQ Machinery gene
  PUV55_RS04930 (PUV55_04930) comD 1015913..1016254 (-) 342 WP_234799212.1 hypothetical protein Machinery gene
  PUV55_RS04935 (PUV55_04935) comC 1016299..1016829 (-) 531 WP_149350765.1 ATPase Machinery gene
  PUV55_RS04940 (PUV55_04940) comB 1016826..1017347 (-) 522 WP_010785956.1 hypothetical protein Machinery gene
  PUV55_RS04945 (PUV55_04945) comA 1017323..1018000 (-) 678 WP_005712510.1 hypothetical protein Machinery gene
  PUV55_RS04950 (PUV55_04950) - 1018154..1020709 (+) 2556 WP_035490200.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 47079.07 Da        Isoelectric Point: 8.9232

>NTDB_id=721401 PUV55_RS04925 WP_010785953.1 1014641..1015903(-) (comE) [Glaesserella parasuis strain XP11]
MRYLFLLFFATFPVLANQQISLSIRNAPTAEIIGYLAEETGKNITISDEIKDTKNFRVEKSHFDEILNSLIKTHQLNLKK
ENGIYYIHQAQEHKQHTTAQLVNALPKLITKTIKLHYSKASEVIESLTKGQGNLLSENGYLHFDDRSNSIIVKDSAASVK
NFTQLIETLDKPTEQIAIEARIVTISSEHLQQLGVRWGLFSPNENHYKLAGNLEGNGLTTNNLNVNFPVNPSASVALQIA
AINSRVLHLELTALESENNIEIIASPRLLTTDKKPASIKQGTEIPYAMYSKKKEITDIEFREAVLGLEVTPHISKQNQIL
LDLAISQNSPNNQMNNMMATIDKQEINTQVLAKHGETIVLGGIFQHLIAKGEDKVPLLGSIPVIKRLFSQNRDKISKREL
VIFVTPYIVKSEKMGAEKQK

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=721401 PUV55_RS04925 WP_010785953.1 1014641..1015903(-) (comE) [Glaesserella parasuis strain XP11]
ATGCGTTATTTATTCCTGCTATTCTTTGCTACTTTTCCTGTATTAGCAAACCAACAGATTTCACTTTCGATAAGAAATGC
CCCTACGGCAGAAATTATTGGTTATTTAGCTGAAGAAACGGGAAAAAATATTACGATTTCAGATGAGATTAAAGATACAA
AAAATTTCAGAGTAGAAAAAAGCCATTTTGATGAGATATTAAATAGTTTAATCAAAACACATCAATTAAATTTAAAAAAA
GAAAATGGCATTTACTATATTCATCAAGCCCAAGAACATAAACAACATACTACGGCACAATTAGTTAATGCTCTGCCTAA
ATTAATCACCAAAACAATCAAGTTACACTATTCCAAAGCCTCTGAAGTAATAGAGTCTTTGACAAAAGGGCAAGGCAACT
TGCTATCAGAGAATGGTTATCTTCATTTTGATGATCGCAGTAATAGTATTATCGTCAAAGACAGTGCCGCATCGGTTAAA
AACTTTACTCAACTTATTGAAACCCTAGATAAACCAACGGAACAAATTGCAATTGAAGCCCGAATTGTCACGATCAGCAG
TGAACATTTACAACAACTTGGCGTGCGTTGGGGTTTATTTTCCCCTAACGAAAATCACTACAAATTGGCAGGAAACTTAG
AGGGCAACGGATTAACTACCAACAACTTAAACGTAAATTTTCCAGTAAATCCGTCCGCTTCCGTTGCCTTACAAATTGCC
GCTATCAACAGCCGTGTACTTCATTTAGAACTCACCGCATTAGAGAGCGAAAATAACATTGAGATCATTGCAAGCCCTCG
CTTACTCACAACAGATAAAAAACCAGCGAGTATCAAACAAGGTACAGAGATTCCTTATGCAATGTACAGTAAGAAAAAGG
AAATCACCGATATTGAATTTCGTGAAGCGGTTTTGGGGCTAGAAGTCACGCCACATATTTCTAAACAAAATCAGATTTTG
TTAGATCTTGCCATTAGCCAAAATTCGCCAAATAACCAGATGAACAATATGATGGCAACGATTGATAAACAAGAAATTAA
TACACAAGTCCTTGCTAAACACGGCGAAACCATCGTATTAGGCGGTATTTTTCAACATCTGATCGCCAAAGGCGAAGATA
AAGTCCCGCTGTTAGGCAGTATCCCCGTGATTAAACGCTTATTTAGCCAAAACCGAGATAAAATCTCTAAACGGGAGCTG
GTTATTTTTGTTACGCCTTATATTGTAAAATCTGAAAAAATGGGAGCGGAAAAGCAGAAATAA

Domains

Predicted by InterProScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(110-175)

Bacterial type II and III secretion system protein (Secretin)

(253-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Glaesserella parasuis strain SC1401

96.905

100

0.969
  comE Haemophilus influenzae Rd KW20

52.706

100

0.533
  comE Haemophilus influenzae 86-028NP

51.765

100

0.524
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

37.44

98.571

0.369
  pilQ Vibrio cholerae strain A1552

37.44

98.571

0.369
  pilQ Vibrio campbellii strain DS40M4

36.019

100

0.362