Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD   Type   Machinery gene
Locus tag   PUV55_RS04930 Genome accession   NZ_CP118165
Coordinates   1015913..1016254 (-) Length   113 a.a.
NCBI ID   WP_234799212.1    Uniprot ID   -
Organism   Glaesserella parasuis strain XP11     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1010913..1021254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUV55_RS04900 (PUV55_04900) trxA 1011457..1011771 (-) 315 WP_005712493.1 thioredoxin -
  PUV55_RS04905 (PUV55_04905) - 1012068..1012697 (-) 630 WP_010785950.1 LysE family transporter -
  PUV55_RS04910 (PUV55_04910) - 1012699..1013169 (-) 471 WP_005712497.1 phosphatidylglycerophosphatase A -
  PUV55_RS04915 (PUV55_04915) thiL 1013172..1014140 (-) 969 WP_021110497.1 thiamine-phosphate kinase -
  PUV55_RS04920 (PUV55_04920) nusB 1014149..1014562 (-) 414 WP_005712500.1 transcription antitermination factor NusB -
  PUV55_RS04925 (PUV55_04925) comE 1014641..1015903 (-) 1263 WP_010785953.1 type IV pilus secretin PilQ Machinery gene
  PUV55_RS04930 (PUV55_04930) comD 1015913..1016254 (-) 342 WP_234799212.1 hypothetical protein Machinery gene
  PUV55_RS04935 (PUV55_04935) comC 1016299..1016829 (-) 531 WP_149350765.1 ATPase Machinery gene
  PUV55_RS04940 (PUV55_04940) comB 1016826..1017347 (-) 522 WP_010785956.1 hypothetical protein Machinery gene
  PUV55_RS04945 (PUV55_04945) comA 1017323..1018000 (-) 678 WP_005712510.1 hypothetical protein Machinery gene
  PUV55_RS04950 (PUV55_04950) - 1018154..1020709 (+) 2556 WP_035490200.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 13207.93 Da        Isoelectric Point: 4.8667

>NTDB_id=721402 PUV55_RS04930 WP_234799212.1 1015913..1016254(-) (comD) [Glaesserella parasuis strain XP11]
MADPFYAKENTQDQPQTAKDQNKTTACTPTEKVNEIHLTTDFDKLQLIGIIQIDDKIRAIFIDDKKQLIDLYPNDYLSHS
FIQIKEIDFKSVSYIDWQKTENCQSPKLFTSKF

Nucleotide


Download         Length: 342 bp        

>NTDB_id=721402 PUV55_RS04930 WP_234799212.1 1015913..1016254(-) (comD) [Glaesserella parasuis strain XP11]
ATGGCAGATCCTTTTTATGCCAAGGAAAATACCCAAGATCAGCCACAAACGGCAAAAGATCAAAACAAAACGACCGCTTG
TACGCCAACAGAGAAGGTGAACGAAATTCACCTCACCACAGATTTTGATAAATTACAGCTTATCGGCATTATTCAGATCG
ACGATAAAATTCGAGCGATTTTTATAGATGATAAAAAACAGCTTATAGATTTATATCCTAACGACTATTTAAGCCATTCC
TTTATTCAAATTAAAGAGATTGATTTTAAATCGGTTAGTTATATTGATTGGCAAAAAACAGAAAATTGCCAATCCCCTAA
ATTGTTTACTTCAAAATTTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD Glaesserella parasuis strain SC1401

92.035

100

0.92