Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NW945_RS10115 Genome accession   NZ_CP102974
Coordinates   2075248..2075643 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 01-RR-86     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2070248..2080643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW945_RS10090 (NW945_10090) thiE 2070710..2071351 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  NW945_RS10095 (NW945_10095) thiM 2071353..2072144 (-) 792 WP_001108489.1 hydroxyethylthiazole kinase -
  NW945_RS10100 (NW945_10100) thiD 2072128..2072958 (-) 831 WP_258414261.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  NW945_RS10105 (NW945_10105) tenA 2072951..2073640 (-) 690 WP_240017289.1 thiaminase II -
  NW945_RS10110 (NW945_10110) sceD 2074164..2074859 (-) 696 WP_000752001.1 lytic transglycosylase SceD -
  NW945_RS10115 (NW945_10115) ssb 2075248..2075643 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  NW945_RS10120 (NW945_10120) - 2075837..2076277 (+) 441 WP_000846746.1 YwpF-like family protein -
  NW945_RS10125 (NW945_10125) fabZ 2076334..2076774 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  NW945_RS10130 (NW945_10130) murA 2076808..2078073 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  NW945_RS10135 (NW945_10135) - 2078184..2078417 (-) 234 WP_258414262.1 DUF1146 family protein -
  NW945_RS10140 (NW945_10140) - 2078549..2078641 (-) 93 WP_031929694.1 hypothetical protein -
  NW945_RS10145 (NW945_10145) - 2079036..2079440 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=720972 NW945_RS10115 WP_000932694.1 2075248..2075643(-) (ssb) [Staphylococcus aureus strain 01-RR-86]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=720972 NW945_RS10115 WP_000932694.1 2075248..2075643(-) (ssb) [Staphylococcus aureus strain 01-RR-86]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992