Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   NW975_RS07700 Genome accession   NZ_CP102971
Coordinates   1611619..1612305 (-) Length   228 a.a.
NCBI ID   WP_072353822.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 08-G-E     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1606619..1617305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW975_RS07680 (NW975_07680) rpsT 1607533..1607784 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  NW975_RS07685 (NW975_07685) holA 1607829..1608803 (-) 975 WP_001282562.1 DNA polymerase III subunit delta -
  NW975_RS07690 (NW975_07690) comEC 1608860..1611061 (-) 2202 WP_258413891.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NW975_RS07695 (NW975_07695) - 1611066..1611527 (-) 462 WP_000439693.1 ComE operon protein 2 -
  NW975_RS07700 (NW975_07700) comEA 1611619..1612305 (-) 687 WP_072353822.1 ComEA family DNA-binding protein Machinery gene
  NW975_RS07705 (NW975_07705) - 1612345..1613061 (-) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  NW975_RS07710 (NW975_07710) rsfS 1613064..1613417 (-) 354 WP_001088020.1 ribosome silencing factor -
  NW975_RS07715 (NW975_07715) yqeK 1613418..1614002 (-) 585 WP_001019320.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  NW975_RS07720 (NW975_07720) nadD 1613992..1614561 (-) 570 WP_258414684.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  NW975_RS07725 (NW975_07725) yhbY 1614564..1614854 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  NW975_RS07730 (NW975_07730) aroE 1614858..1615664 (-) 807 WP_258411176.1 shikimate dehydrogenase -
  NW975_RS07735 (NW975_07735) yqeH 1615678..1616778 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25773.50 Da        Isoelectric Point: 9.6753

>NTDB_id=720877 NW975_RS07700 WP_072353822.1 1611619..1612305(-) (comEA) [Staphylococcus aureus strain 08-G-E]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=720877 NW975_RS07700 WP_072353822.1 1611619..1612305(-) (comEA) [Staphylococcus aureus strain 08-G-E]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCATGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

99.561

100

0.996
  comEA Staphylococcus aureus N315

97.807

100

0.978