Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   NW965_RS07220 Genome accession   NZ_CP102968
Coordinates   1533048..1533545 (-) Length   165 a.a.
NCBI ID   WP_001789864.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 13-G-52     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1528048..1538545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW965_RS07195 (NW965_07190) gcvPB 1528210..1529682 (-) 1473 WP_000202188.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  NW965_RS07200 (NW965_07195) gcvPA 1529675..1531021 (-) 1347 WP_258411690.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  NW965_RS07205 (NW965_07200) gcvT 1531041..1532132 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  NW965_RS07210 (NW965_07205) - 1532291..1532815 (-) 525 WP_001015121.1 shikimate kinase -
  NW965_RS07215 (NW965_07210) - 1532805..1532951 (-) 147 WP_001789879.1 hypothetical protein -
  NW965_RS07220 (NW965_07215) comGF 1533048..1533545 (-) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  NW965_RS07225 (NW965_07220) comGE 1533463..1533762 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  NW965_RS07230 (NW965_07225) comGD 1533749..1534195 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  NW965_RS07235 (NW965_07230) comGC 1534173..1534484 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  NW965_RS07240 (NW965_07235) comGB 1534498..1535568 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  NW965_RS07245 (NW965_07240) comGA 1535540..1536514 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  NW965_RS07250 (NW965_07245) - 1536566..1537189 (-) 624 WP_209281829.1 MBL fold metallo-hydrolase -
  NW965_RS07255 (NW965_07250) - 1537186..1537515 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  NW965_RS07260 (NW965_07255) - 1537515..1538501 (-) 987 WP_000161315.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19164.88 Da        Isoelectric Point: 10.2192

>NTDB_id=720787 NW965_RS07220 WP_001789864.1 1533048..1533545(-) (comGF) [Staphylococcus aureus strain 13-G-52]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRDLTTVDFEFFSRDI
LDDFKGVDRNDIEIRQHRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNVQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=720787 NW965_RS07220 WP_001789864.1 1533048..1533545(-) (comGF) [Staphylococcus aureus strain 13-G-52]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGTAAAACTTTTCTAATTGAAAGTAGGGATTTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGATGATTTTAAAGGAGTAGATAGAAACGATATTGAAATTAGGCAACACCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATTAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(67-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus MW2

100

100

1
  comGF Staphylococcus aureus N315

96.364

100

0.964