Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   PUW71_RS04565 Genome accession   NZ_CP118053
Coordinates   905799..906869 (-) Length   356 a.a.
NCBI ID   WP_070811350.1    Uniprot ID   -
Organism   Streptococcus anginosus strain VSI40     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 900799..911869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW71_RS04540 (PUW71_04540) - 900805..901848 (+) 1044 WP_024051537.1 dihydrolipoamide acetyltransferase -
  PUW71_RS04545 (PUW71_04545) lpdA 901880..903583 (+) 1704 WP_024051538.1 dihydrolipoyl dehydrogenase -
  PUW71_RS04550 (PUW71_04550) - 903592..904581 (+) 990 WP_003034477.1 lipoate--protein ligase -
  PUW71_RS04555 (PUW71_04555) - 904933..905610 (+) 678 WP_264341287.1 SDR family NAD(P)-dependent oxidoreductase -
  PUW71_RS04560 (PUW71_04560) - 905594..905737 (+) 144 WP_264341286.1 SDR family oxidoreductase -
  PUW71_RS04565 (PUW71_04565) xerS 905799..906869 (-) 1071 WP_070811350.1 tyrosine recombinase XerS Machinery gene
  PUW71_RS04570 (PUW71_04570) - 907062..907409 (-) 348 WP_191622006.1 ABC transporter -
  PUW71_RS04575 (PUW71_04575) ffh 907485..909035 (-) 1551 WP_264341285.1 signal recognition particle protein -
  PUW71_RS04580 (PUW71_04580) - 909096..909428 (-) 333 WP_150888931.1 putative DNA-binding protein -
  PUW71_RS04585 (PUW71_04585) - 909544..910242 (-) 699 WP_150888941.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41389.42 Da        Isoelectric Point: 9.1829

>NTDB_id=720790 PUW71_RS04565 WP_070811350.1 905799..906869(-) (xerS) [Streptococcus anginosus strain VSI40]
MKREILLERIEKLKAIMPWYVLEYYQSKLTVPYSFTTLYEYLKEYDRFFHWILDSGIDDGPQIAEIPLSVLENMTKKDME
AFILYLRERPLLNVNTTQNGVSQTTINRTLSALSSLYKYLTEEVENENGEPYFYRNVMKKVSTKKKRETLAARAENIKQK
LFLGEETEQFLNYIDEEYPKNLSNRALSSFDKNKERDLAIIALLLASGVRLSEAVNLDLKDLNLKMMVIEVTRKGGKRDS
VNVAAFAKAYLERYLEVRSKRYKAEKSDTALFLTEYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=720790 PUW71_RS04565 WP_070811350.1 905799..906869(-) (xerS) [Streptococcus anginosus strain VSI40]
ATGAAACGCGAAATATTGTTAGAAAGAATTGAAAAACTAAAGGCCATCATGCCTTGGTACGTTTTGGAATACTATCAGTC
TAAATTGACTGTTCCATACAGTTTTACAACCTTATATGAATATCTCAAAGAATATGATCGCTTTTTTCATTGGATTTTAG
ACTCTGGAATTGATGATGGGCCGCAGATTGCAGAAATTCCTCTGTCAGTATTGGAAAATATGACTAAAAAAGATATGGAA
GCGTTTATTCTTTACTTACGGGAGCGTCCATTGCTTAATGTTAATACTACACAGAACGGAGTATCGCAAACCACCATTAA
TCGCACTCTTTCTGCTCTCTCTAGCCTTTATAAATATTTAACTGAAGAGGTGGAAAATGAGAATGGGGAACCTTATTTCT
ATCGTAATGTCATGAAAAAAGTGTCTACTAAGAAAAAGAGAGAGACTTTAGCCGCGCGCGCTGAAAACATCAAACAAAAA
CTCTTTTTGGGCGAAGAAACTGAACAATTTTTGAATTATATTGATGAAGAATACCCTAAAAATTTATCAAATCGGGCTCT
CTCCTCTTTTGACAAAAATAAAGAGCGAGATTTGGCAATCATAGCACTGCTTCTTGCATCTGGTGTTCGTCTATCCGAGG
CAGTAAATCTTGATTTGAAAGACCTAAATCTTAAAATGATGGTCATTGAAGTTACTCGTAAGGGCGGGAAAAGAGATTCT
GTCAATGTTGCAGCTTTTGCCAAAGCTTATTTGGAAAGGTATCTGGAGGTTCGCTCTAAACGTTACAAAGCGGAAAAATC
AGACACTGCCCTCTTTTTGACAGAATATAGAGGTGTTCCTAACCGGATTGATGCTTCTAGTGTAGAAAAGATGGTTGCTA
AGTATTCTGAAGATTTCAAAGTTCGAGTGACACCTCACAAACTCCGCCATACGCTGGCTACTCGACTTTATGATGCTACT
AAATCTCAAGTTTTGGTCAGTCATCAGCTAGGACATTCCAGCACTCAAGTTACAGACCTCTACACCCATATTGTTAATGA
CGAACAAAAAAATGCATTGGATAACTTATAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(188-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

87.921

100

0.879