Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SERAS_RS21890 Genome accession   NZ_AP019009
Coordinates   4564957..4565487 (-) Length   176 a.a.
NCBI ID   WP_004936793.1    Uniprot ID   A0AAW6X7L8
Organism   Serratia marcescens strain AS-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4559957..4570487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SERAS_RS21855 (SERAS_41980) - 4560331..4560738 (-) 408 WP_016930256.1 VOC family protein -
  SERAS_RS21860 (SERAS_41990) - 4560786..4561454 (-) 669 WP_016930257.1 glutathione S-transferase family protein -
  SERAS_RS21865 (SERAS_42000) - 4561451..4561894 (-) 444 WP_033639278.1 lipocalin-like domain-containing protein -
  SERAS_RS21870 (SERAS_42010) bhsA 4562090..4562350 (+) 261 WP_033639277.1 multiple stress resistance protein BhsA -
  SERAS_RS21875 (SERAS_42020) - 4562500..4563249 (+) 750 WP_016930260.1 3-oxoacyl-ACP reductase family protein -
  SERAS_RS21880 (SERAS_42030) - 4563481..4563693 (+) 213 WP_004936800.1 DUF1471 domain-containing protein -
  SERAS_RS21885 (SERAS_42040) - 4563914..4564870 (+) 957 WP_117287253.1 cyclase family protein -
  SERAS_RS21890 (SERAS_42050) ssb 4564957..4565487 (-) 531 WP_004936793.1 single-stranded DNA-binding protein SSB1 Machinery gene
  SERAS_RS21900 (SERAS_42060) uvrA 4565765..4568593 (+) 2829 WP_015379213.1 excinuclease ABC subunit UvrA -
  SERAS_RS21905 (SERAS_42070) - 4568823..4569875 (+) 1053 WP_016930261.1 NAD(P)-dependent alcohol dehydrogenase -
  SERAS_RS21910 (SERAS_42080) maa 4569907..4570464 (-) 558 WP_016930262.1 maltose O-acetyltransferase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18808.71 Da        Isoelectric Point: 5.2358

>NTDB_id=72066 SERAS_RS21890 WP_004936793.1 4564957..4565487(-) (ssb) [Serratia marcescens strain AS-1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
ATSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=72066 SERAS_RS21890 WP_004936793.1 4564957..4565487(-) (ssb) [Serratia marcescens strain AS-1]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAAAAGACCG
AATGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCAGGTCAATCTGCCGGCGGCCAGGGTGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGCCCGGCGCAGAACAGCGCACCG
GCGACCAGCAACGAACCACCAATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.243

100

0.784
  ssb Glaesserella parasuis strain SC1401

59.14

100

0.625
  ssb Neisseria meningitidis MC58

46.591

100

0.466
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.466
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.158

100

0.364

Multiple sequence alignment