Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   NW979_RS02555 Genome accession   NZ_CP102959
Coordinates   546300..546869 (+) Length   189 a.a.
NCBI ID   WP_258410433.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 12-G-51     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 541300..551869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW979_RS02530 (NW979_02530) cysE 542513..543160 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  NW979_RS02535 (NW979_02535) cysS 543144..544544 (+) 1401 WP_000631963.1 cysteine--tRNA ligase -
  NW979_RS02540 (NW979_02540) - 544537..544941 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  NW979_RS02545 (NW979_02545) rlmB 544949..545695 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  NW979_RS02550 (NW979_02550) - 545695..546219 (+) 525 WP_000664738.1 NYN domain-containing protein -
  NW979_RS02555 (NW979_02555) sigH 546300..546869 (+) 570 WP_258410433.1 RNA polymerase sigma factor Regulator
  NW979_RS02560 (NW979_02560) rpmG 546984..547127 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  NW979_RS02565 (NW979_02565) secE 547183..547365 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  NW979_RS02570 (NW979_02570) nusG 547378..547926 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  NW979_RS02575 (NW979_02575) rplK 548107..548529 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  NW979_RS02580 (NW979_02580) rplA 548737..549429 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  NW979_RS02585 (NW979_02585) rplJ 549701..550201 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  NW979_RS02590 (NW979_02590) rplL 550244..550612 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  NW979_RS02595 (NW979_02595) - 550787..551395 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23044.91 Da        Isoelectric Point: 9.3965

>NTDB_id=720486 NW979_RS02555 WP_258410433.1 546300..546869(+) (sigH) [Staphylococcus aureus strain 12-G-51]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=720486 NW979_RS02555 WP_258410433.1 546300..546869(+) (sigH) [Staphylococcus aureus strain 12-G-51]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGATCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATAAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

98.942

100

0.989
  sigH Staphylococcus aureus MW2

98.942

100

0.989