Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EoCCA6_RS13395 Genome accession   NZ_AP019007
Coordinates   2800682..2801212 (+) Length   176 a.a.
NCBI ID   WP_023310055.1    Uniprot ID   A0A7W2V7Q4
Organism   Enterobacter oligotrophicus strain CCA6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2796790..2805328 2800682..2801212 within 0


Gene organization within MGE regions


Location: 2796790..2805328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EoCCA6_RS13385 - 2796790..2797572 (+) 783 WP_152083053.1 CBS domain-containing protein -
  EoCCA6_RS13390 uvrA 2797608..2800430 (-) 2823 WP_152083054.1 excinuclease ABC subunit UvrA -
  EoCCA6_RS13395 ssb 2800682..2801212 (+) 531 WP_023310055.1 single-stranded DNA-binding protein SSB1 Machinery gene
  EoCCA6_RS13400 - 2801255..2802241 (-) 987 WP_152083055.1 EAL domain-containing protein -
  EoCCA6_RS13405 - 2802254..2803018 (-) 765 WP_152083056.1 EAL domain-containing protein -
  EoCCA6_RS13410 - 2803100..2804593 (-) 1494 WP_152083057.1 sensor domain-containing diguanylate cyclase -
  EoCCA6_RS13415 - 2805074..2805322 (-) 249 WP_152083058.1 hypothetical protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18808.81 Da        Isoelectric Point: 5.2456

>NTDB_id=72046 EoCCA6_RS13395 WP_023310055.1 2800682..2801212(+) (ssb) [Enterobacter oligotrophicus strain CCA6]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQSQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=72046 EoCCA6_RS13395 WP_023310055.1 2800682..2801212(+) (ssb) [Enterobacter oligotrophicus strain CCA6]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACCG
AATGGCACCGCGTGGTGCTGTTTGGCAAACTGGCTGAAGTGGCGGGTGAATATCTGCGTAAAGGTTCTCAGGTGTATATT
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGCTGAGAAATACACTACGGAAGTGGTGGTTAACGTAGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGCGGTGGTGCACCGGCAGGTGGCGGTCAGAGCCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCCCCA
GCTCCGTCTAACGAACCGCCAATGGACTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W2V7Q4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.778
  ssb Glaesserella parasuis strain SC1401

56.216

100

0.591
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.364

Multiple sequence alignment