Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACKTUA_RS00655 | Genome accession | NZ_AP018946 |
| Coordinates | 125877..126323 (-) | Length | 148 a.a. |
| NCBI ID | WP_407901452.1 | Uniprot ID | - |
| Organism | Providencia rustigianii strain JH-1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 121233..164471 | 125877..126323 | within | 0 |
Gene organization within MGE regions
Location: 121233..164471
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACKTUA_RS00600 (PRJH_0116) | - | 121233..122516 (-) | 1284 | WP_407901441.1 | Arm DNA-binding domain-containing protein | - |
| ACKTUA_RS00605 | xisR | 122524..122760 (-) | 237 | WP_006659470.1 | excisionase family protein | - |
| ACKTUA_RS00610 (PRJH_0117) | - | 122753..123058 (-) | 306 | WP_407901442.1 | hypothetical protein | - |
| ACKTUA_RS00615 (PRJH_0118) | - | 123172..123717 (-) | 546 | WP_407901444.1 | phage N-6-adenine-methyltransferase | - |
| ACKTUA_RS00620 (PRJH_0119) | - | 123707..124051 (-) | 345 | WP_407901445.1 | phage protein NinX family protein | - |
| ACKTUA_RS00625 (PRJH_0120) | - | 124204..124377 (-) | 174 | WP_407901447.1 | hypothetical protein | - |
| ACKTUA_RS00630 (PRJH_0121) | - | 124380..124697 (-) | 318 | WP_407901448.1 | hypothetical protein | - |
| ACKTUA_RS00635 (PRJH_0122) | - | 124697..124993 (-) | 297 | WP_407901449.1 | hypothetical protein | - |
| ACKTUA_RS00640 (PRJH_0123) | - | 125025..125216 (-) | 192 | WP_407901450.1 | hypothetical protein | - |
| ACKTUA_RS00645 (PRJH_0124) | - | 125260..125538 (-) | 279 | WP_407901451.1 | hypothetical protein | - |
| ACKTUA_RS00650 (PRJH_0125) | - | 125558..125845 (-) | 288 | WP_096864293.1 | hypothetical protein | - |
| ACKTUA_RS00655 (PRJH_0126) | ssb | 125877..126323 (-) | 447 | WP_407901452.1 | single-stranded DNA-binding protein | Machinery gene |
| ACKTUA_RS00660 (PRJH_0127) | - | 126317..127012 (-) | 696 | WP_407901453.1 | lambda exonuclease family protein | - |
| ACKTUA_RS00665 (PRJH_0128) | - | 127009..127893 (-) | 885 | WP_407901454.1 | recombinase RecT | - |
| ACKTUA_RS00670 (PRJH_0129) | - | 127890..128096 (-) | 207 | WP_272519564.1 | hypothetical protein | - |
| ACKTUA_RS00675 (PRJH_0131) | - | 128563..129504 (-) | 942 | WP_407901455.1 | cell envelope biogenesis protein TolA | - |
| ACKTUA_RS00680 (PRJH_0132) | - | 129569..129832 (-) | 264 | WP_407901456.1 | hypothetical protein | - |
| ACKTUA_RS00685 (PRJH_0133) | - | 129834..130034 (-) | 201 | WP_407901457.1 | hypothetical protein | - |
| ACKTUA_RS00690 (PRJH_0134) | - | 130068..130679 (-) | 612 | WP_407901458.1 | Nmad5 family putative nucleotide modification protein | - |
| ACKTUA_RS00695 (PRJH_0135) | - | 130740..130901 (-) | 162 | WP_407901459.1 | hypothetical protein | - |
| ACKTUA_RS00700 (PRJH_0136) | - | 130972..131280 (-) | 309 | WP_154601192.1 | hypothetical protein | - |
| ACKTUA_RS00705 (PRJH_0137) | - | 131661..132536 (-) | 876 | WP_249743606.1 | hypothetical protein | - |
| ACKTUA_RS00710 (PRJH_0138) | - | 132594..133274 (-) | 681 | WP_180312646.1 | LexA family transcriptional regulator | - |
| ACKTUA_RS00715 (PRJH_0139) | - | 133354..133581 (+) | 228 | WP_006659494.1 | AlpA family transcriptional regulator | - |
| ACKTUA_RS00720 (PRJH_0140) | - | 133685..134002 (+) | 318 | WP_407901460.1 | CII family transcriptional regulator | - |
| ACKTUA_RS00725 (PRJH_0141) | - | 134024..134710 (+) | 687 | WP_407901461.1 | phage antirepressor KilAC domain-containing protein | - |
| ACKTUA_RS00730 (PRJH_0142) | - | 134707..135507 (+) | 801 | WP_407901462.1 | replication protein | - |
| ACKTUA_RS00735 (PRJH_0143) | - | 135507..136235 (+) | 729 | WP_407901463.1 | ATP-binding protein | - |
| ACKTUA_RS00740 | - | 136261..136512 (+) | 252 | WP_265497276.1 | hypothetical protein | - |
| ACKTUA_RS00745 (PRJH_0145) | - | 136528..136749 (+) | 222 | WP_407901464.1 | hypothetical protein | - |
| ACKTUA_RS00750 | - | 136749..136997 (+) | 249 | WP_126459692.1 | DUF551 domain-containing protein | - |
| ACKTUA_RS00755 (PRJH_0146) | - | 136997..137191 (+) | 195 | WP_210850018.1 | Lar family restriction alleviation protein | - |
| ACKTUA_RS00760 (PRJH_0147) | - | 137184..137405 (+) | 222 | WP_407901465.1 | hypothetical protein | - |
| ACKTUA_RS00765 (PRJH_0148) | - | 137407..137853 (+) | 447 | WP_126459700.1 | DUF1367 family protein | - |
| ACKTUA_RS00770 | - | 137869..138039 (+) | 171 | WP_407901466.1 | hypothetical protein | - |
| ACKTUA_RS00775 (PRJH_0149) | - | 138039..138182 (+) | 144 | WP_407901467.1 | hypothetical protein | - |
| ACKTUA_RS00780 (PRJH_0150) | - | 138179..138331 (+) | 153 | WP_407901468.1 | hypothetical protein | - |
| ACKTUA_RS00785 | - | 138324..138614 (+) | 291 | WP_407901469.1 | DUF1364 domain-containing protein | - |
| ACKTUA_RS00790 | - | 138611..138976 (+) | 366 | WP_407901470.1 | RusA family crossover junction endodeoxyribonuclease | - |
| ACKTUA_RS00795 (PRJH_0152) | - | 139163..139921 (+) | 759 | WP_265498574.1 | antitermination protein | - |
| ACKTUA_RS00800 (PRJH_0154) | - | 140332..140745 (+) | 414 | WP_036983124.1 | putative holin | - |
| ACKTUA_RS00805 (PRJH_0155) | - | 140742..141059 (+) | 318 | WP_407901472.1 | hypothetical protein | - |
| ACKTUA_RS00810 (PRJH_0156) | - | 141007..141399 (+) | 393 | WP_407901473.1 | M15 family metallopeptidase | - |
| ACKTUA_RS00815 (PRJH_0157) | - | 141396..141845 (+) | 450 | WP_407901474.1 | lysis protein | - |
| ACKTUA_RS00820 (PRJH_0158) | - | 142050..142214 (+) | 165 | WP_164717582.1 | hypothetical protein | - |
| ACKTUA_RS00825 (PRJH_0159) | - | 142303..142827 (+) | 525 | WP_407901475.1 | terminase small subunit | - |
| ACKTUA_RS00830 (PRJH_0160) | - | 142820..144169 (+) | 1350 | WP_407901476.1 | PBSX family phage terminase large subunit | - |
| ACKTUA_RS00835 (PRJH_0161) | - | 144169..145701 (+) | 1533 | WP_407901477.1 | DUF1073 domain-containing protein | - |
| ACKTUA_RS00840 (PRJH_0162) | - | 145709..146464 (+) | 756 | WP_407901478.1 | phage minor head protein | - |
| ACKTUA_RS00845 (PRJH_0163) | - | 146477..147691 (+) | 1215 | WP_407901479.1 | DUF2213 domain-containing protein | - |
| ACKTUA_RS00850 (PRJH_0164) | - | 147704..148189 (+) | 486 | WP_407901480.1 | hypothetical protein | - |
| ACKTUA_RS00855 (PRJH_0165) | - | 148199..149197 (+) | 999 | WP_407901481.1 | DUF2184 domain-containing protein | - |
| ACKTUA_RS00860 (PRJH_0166) | - | 149257..149574 (+) | 318 | WP_164529004.1 | hypothetical protein | - |
| ACKTUA_RS00865 (PRJH_0167) | - | 149601..150059 (+) | 459 | WP_407901482.1 | DUF4054 domain-containing protein | - |
| ACKTUA_RS00870 (PRJH_0168) | - | 150052..150504 (+) | 453 | WP_407901483.1 | hypothetical protein | - |
| ACKTUA_RS00875 (PRJH_0169) | - | 150491..150874 (+) | 384 | WP_407901484.1 | hypothetical protein | - |
| ACKTUA_RS00880 (PRJH_0170) | - | 150859..151347 (+) | 489 | WP_407901485.1 | LIC_12616 family protein | - |
| ACKTUA_RS00885 (PRJH_0171) | - | 151357..152817 (+) | 1461 | WP_407901486.1 | DUF3383 domain-containing protein | - |
| ACKTUA_RS00890 (PRJH_0172) | - | 152831..153277 (+) | 447 | WP_051473540.1 | phage tail fiber protein | - |
| ACKTUA_RS00895 (PRJH_0173) | - | 153277..153687 (+) | 411 | WP_154633697.1 | hypothetical protein | - |
| ACKTUA_RS00900 (PRJH_0175) | - | 154144..156291 (+) | 2148 | WP_407901487.1 | hypothetical protein | - |
| ACKTUA_RS00905 (PRJH_0176) | - | 156355..156819 (+) | 465 | WP_407901488.1 | hypothetical protein | - |
| ACKTUA_RS00910 (PRJH_0177) | - | 156978..157451 (+) | 474 | WP_407901489.1 | hypothetical protein | - |
| ACKTUA_RS00915 (PRJH_0178) | - | 157570..158322 (+) | 753 | WP_195848939.1 | phage baseplate protein | - |
| ACKTUA_RS00920 (PRJH_0179) | - | 158581..159468 (+) | 888 | WP_407901490.1 | baseplate hub protein | - |
| ACKTUA_RS00925 (PRJH_0180) | - | 159455..160141 (+) | 687 | WP_407901491.1 | phage baseplate protein | - |
| ACKTUA_RS00930 (PRJH_0181) | - | 160145..160498 (+) | 354 | WP_407901492.1 | hypothetical protein | - |
| ACKTUA_RS00935 (PRJH_0182) | - | 160495..161685 (+) | 1191 | WP_407901493.1 | baseplate J/gp47 family protein | - |
| ACKTUA_RS00940 (PRJH_0183) | - | 161685..162317 (+) | 633 | WP_407901494.1 | DUF2612 domain-containing protein | - |
| ACKTUA_RS00945 (PRJH_0184) | - | 162325..163857 (+) | 1533 | WP_407901495.1 | hypothetical protein | - |
| ACKTUA_RS00950 (PRJH_0185) | - | 163857..164471 (+) | 615 | WP_407901496.1 | tail fiber assembly protein | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 16736.82 Da Isoelectric Point: 6.9851
>NTDB_id=71999 ACKTUA_RS00655 WP_407901452.1 125877..126323(-) (ssb) [Providencia rustigianii strain JH-1]
MLNEVNIIGHLGNDPEIRYQPNGDAIATMSIGCSERWKDKKTGEQKEKTEWIRVVVFGKLAENVGEYLKKGSLVFVKGKF
RTRKWQDQSGQDRYSTEVTVGMDGIVKFLDKKPLSQSTQQQGGWGQPQQPAQQSNEPPMDFSDSDIPF
MLNEVNIIGHLGNDPEIRYQPNGDAIATMSIGCSERWKDKKTGEQKEKTEWIRVVVFGKLAENVGEYLKKGSLVFVKGKF
RTRKWQDQSGQDRYSTEVTVGMDGIVKFLDKKPLSQSTQQQGGWGQPQQPAQQSNEPPMDFSDSDIPF
Nucleotide
Download Length: 447 bp
>NTDB_id=71999 ACKTUA_RS00655 WP_407901452.1 125877..126323(-) (ssb) [Providencia rustigianii strain JH-1]
ATGCTAAACGAAGTAAATATTATTGGTCATCTTGGCAATGATCCTGAAATCCGATACCAGCCTAACGGTGATGCTATCGC
AACTATGTCTATCGGATGCTCAGAGCGTTGGAAAGACAAAAAAACTGGCGAGCAAAAAGAAAAAACTGAATGGATACGTG
TTGTTGTGTTTGGAAAATTAGCTGAAAACGTTGGAGAGTATCTTAAAAAAGGTTCGCTAGTTTTTGTAAAAGGAAAATTC
CGAACTAGAAAATGGCAAGATCAGTCAGGACAAGATAGATATTCGACTGAGGTCACTGTTGGAATGGATGGCATCGTGAA
GTTTCTAGACAAGAAACCACTGTCACAATCCACACAGCAACAAGGTGGATGGGGACAACCACAGCAACCAGCCCAGCAAA
GCAATGAGCCACCAATGGACTTCAGCGACTCAGATATACCCTTCTGA
ATGCTAAACGAAGTAAATATTATTGGTCATCTTGGCAATGATCCTGAAATCCGATACCAGCCTAACGGTGATGCTATCGC
AACTATGTCTATCGGATGCTCAGAGCGTTGGAAAGACAAAAAAACTGGCGAGCAAAAAGAAAAAACTGAATGGATACGTG
TTGTTGTGTTTGGAAAATTAGCTGAAAACGTTGGAGAGTATCTTAAAAAAGGTTCGCTAGTTTTTGTAAAAGGAAAATTC
CGAACTAGAAAATGGCAAGATCAGTCAGGACAAGATAGATATTCGACTGAGGTCACTGTTGGAATGGATGGCATCGTGAA
GTTTCTAGACAAGAAACCACTGTCACAATCCACACAGCAACAAGGTGGATGGGGACAACCACAGCAACCAGCCCAGCAAA
GCAATGAGCCACCAATGGACTTCAGCGACTCAGATATACCCTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
53.757 |
100 |
0.628 |
| ssb | Glaesserella parasuis strain SC1401 |
44.751 |
100 |
0.547 |
| ssb | Neisseria meningitidis MC58 |
40.278 |
97.297 |
0.392 |
| ssb | Neisseria gonorrhoeae MS11 |
40.278 |
97.297 |
0.392 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
30.682 |
100 |
0.365 |