Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilM   Type   Machinery gene
Locus tag   MKL45_RS16495 Genome accession   NZ_CP102934
Coordinates   3473822..3474880 (-) Length   352 a.a.
NCBI ID   WP_002014066.1    Uniprot ID   N9LI98
Organism   Acinetobacter sp. AOR07_HL     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 3468822..3479880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKL45_RS16470 (MKL45_16475) aroK 3469097..3469666 (-) 570 WP_000643712.1 shikimate kinase AroK -
  MKL45_RS16475 (MKL45_16480) pilQ 3469678..3471843 (-) 2166 WP_002062175.1 type IV pilus secretin PilQ family protein Machinery gene
  MKL45_RS16480 (MKL45_16485) pilP 3471906..3472433 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  MKL45_RS16485 (MKL45_16490) pilO 3472444..3473184 (-) 741 WP_000081156.1 type 4a pilus biogenesis protein PilO Machinery gene
  MKL45_RS16490 (MKL45_16495) pilN 3473181..3473822 (-) 642 WP_000201224.1 PilN domain-containing protein Machinery gene
  MKL45_RS16495 (MKL45_16500) pilM 3473822..3474880 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  MKL45_RS16500 (MKL45_16505) ponA 3475044..3477599 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  MKL45_RS16505 (MKL45_16510) - 3477617..3478441 (-) 825 WP_002125608.1 methyltransferase domain-containing protein -
  MKL45_RS16510 (MKL45_16515) - 3478444..3478776 (-) 333 WP_000169599.1 hypothetical protein -

Sequence


Protein


Download         Length: 352 a.a.        Molecular weight: 39032.59 Da        Isoelectric Point: 4.4618

>NTDB_id=719975 MKL45_RS16495 WP_002014066.1 3473822..3474880(-) (pilM) [Acinetobacter sp. AOR07_HL]
MLRLYRKPNKGLMGVDISSTSVKLLELSVKNGKYWVESYALMPLPENSVVEKNILNPEAVAEALERAMNLANPQTTHAAI
AVPTSTVIHKTIEMDADMSDDEREVQIRVDAEQYIPFPLDEVSLDFEVLPDRLANPNRVNVLLVATRTENVETRVEVLEL
ADLNPKLADVESYAVERAFSVFADSLPMGANTIGILDIGHTMTTLSVMQNGKIIYTREQVFGGKQLTLEIQSRYGLSLEE
ASRAKKDRSLPDDYEIEVLDPFLDAVVQQAARSLQFFFSSSQFNEIDHILLAGGNANIPGLAKLLQQKLGYRVTIANPFL
QMGFSPQVDVQKIENDASSLMVACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=719975 MKL45_RS16495 WP_002014066.1 3473822..3474880(-) (pilM) [Acinetobacter sp. AOR07_HL]
GTGCTCAGGTTATATCGTAAACCTAATAAGGGGTTAATGGGTGTCGATATTAGTTCGACTTCTGTTAAGTTGTTAGAGCT
CTCTGTCAAGAACGGTAAATATTGGGTAGAAAGCTATGCTTTGATGCCTTTACCCGAAAACAGTGTAGTTGAAAAAAATA
TCTTAAATCCAGAAGCAGTTGCAGAGGCTTTGGAACGGGCGATGAATTTAGCAAATCCCCAAACCACTCATGCTGCAATT
GCTGTTCCGACATCGACGGTTATTCATAAAACTATCGAAATGGATGCAGATATGAGCGATGACGAACGCGAAGTTCAGAT
TCGTGTAGATGCGGAGCAGTATATACCGTTCCCTTTAGATGAGGTGAGCCTTGATTTTGAGGTTTTGCCGGATCGTCTTG
CGAATCCAAATCGTGTAAATGTGCTCTTGGTCGCCACAAGAACAGAAAACGTTGAAACACGCGTTGAAGTGCTTGAATTG
GCAGATTTAAATCCTAAATTGGCTGATGTCGAAAGTTACGCGGTTGAGCGCGCTTTTAGCGTGTTTGCTGATAGCTTACC
GATGGGTGCAAATACCATAGGGATTTTAGATATCGGTCATACCATGACGACATTATCTGTCATGCAAAATGGCAAGATTA
TTTATACACGAGAGCAGGTTTTCGGCGGAAAACAACTTACGCTTGAAATTCAAAGTCGTTATGGTTTGTCTTTAGAAGAA
GCAAGCCGAGCAAAAAAAGATCGCTCTTTACCAGATGATTATGAAATTGAAGTGCTAGACCCATTTCTAGATGCGGTAGT
TCAGCAGGCGGCCCGTTCACTACAATTTTTCTTTTCTTCATCCCAATTTAACGAAATAGACCATATTTTGCTCGCTGGTG
GAAATGCGAATATTCCAGGCCTTGCTAAGCTTTTGCAGCAAAAATTGGGCTACCGTGTCACGATTGCCAACCCGTTTTTA
CAAATGGGCTTTTCTCCTCAAGTCGATGTTCAAAAAATTGAAAATGATGCTTCATCTTTAATGGTGGCATGTGGCTTGGC
TTTAAGGAGTTTTGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB N9LI98

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

100

100

1

  comM Acinetobacter nosocomialis M2

99.148

100

0.991

  comM Acinetobacter baylyi ADP1

81.534

100

0.815

  pilM Legionella pneumophila strain ERS1305867

42.09

100

0.423