Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   NW313_RS04745 Genome accession   NZ_CP102927
Coordinates   1011219..1011530 (+) Length   103 a.a.
NCBI ID   WP_001166105.1    Uniprot ID   Q9KQT1
Organism   Vibrio cholerae strain N1252     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1006219..1016530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW313_RS04730 lon 1006256..1008616 (+) 2361 WP_001047611.1 endopeptidase La -
  NW313_RS04735 - 1008800..1009072 (+) 273 WP_001044516.1 HU family DNA-binding protein -
  NW313_RS04740 ppiD 1009225..1011084 (+) 1860 WP_000969331.1 peptidylprolyl isomerase -
  NW313_RS04745 comEA 1011219..1011530 (+) 312 WP_001166105.1 ComEA family DNA-binding protein Machinery gene
  NW313_RS04750 cmk 1011713..1012390 (+) 678 WP_000094752.1 (d)CMP kinase -
  NW313_RS04755 rpsA 1012499..1014169 (+) 1671 WP_000140318.1 30S ribosomal protein S1 -
  NW313_RS04760 ihfB 1014457..1014735 (+) 279 WP_000167341.1 integration host factor subunit beta -
  NW313_RS04765 - 1014874..1015155 (+) 282 WP_000691492.1 LapA family protein -
  NW313_RS04770 lapB 1015167..1016336 (+) 1170 WP_000889971.1 lipopolysaccharide assembly protein LapB -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 10966.78 Da        Isoelectric Point: 5.0506

>NTDB_id=719751 NW313_RS04745 WP_001166105.1 1011219..1011530(+) (comEA) [Vibrio cholerae strain N1252]
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL

Nucleotide


Download         Length: 312 bp        

>NTDB_id=719751 NW313_RS04745 WP_001166105.1 1011219..1011530(+) (comEA) [Vibrio cholerae strain N1252]
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAATATTAATACCGCTTCTGCAGAAGAGCTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(41-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KQT1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

100

100

1
  comEA Vibrio cholerae strain A1552

100

100

1
  comEA Vibrio parahaemolyticus RIMD 2210633

62.766

91.262

0.573
  comEA Vibrio campbellii strain DS40M4

58.333

93.204

0.544
  comE1/comEA Haemophilus influenzae Rd KW20

40.541

100

0.437