Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   EL263_RS09170 Genome accession   NZ_AP018938
Coordinates   1726892..1728889 (-) Length   665 a.a.
NCBI ID   WP_114880767.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ATCC 49619     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1721892..1733889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL263_RS09150 (SPAT_1737) amiF 1722390..1723316 (-) 927 WP_044812815.1 ATP-binding cassette domain-containing protein Regulator
  EL263_RS09155 (SPAT_1738) amiE 1723327..1724394 (-) 1068 WP_000159553.1 ABC transporter ATP-binding protein Regulator
  EL263_RS09160 (SPAT_1739) amiD 1724403..1725329 (-) 927 WP_000103697.1 oligopeptide ABC transporter permease OppC Regulator
  EL263_RS09165 (SPAT_1740) amiC 1725329..1726825 (-) 1497 WP_000759902.1 ABC transporter permease Regulator
  EL263_RS09170 (SPAT_1741) amiA3 1726892..1728889 (-) 1998 WP_114880767.1 peptide ABC transporter substrate-binding protein Regulator
  EL263_RS09175 (SPAT_1742) - 1729557..1730750 (-) 1194 WP_000835622.1 O-antigen ligase family protein -
  EL263_RS09185 (SPAT_1743) gtfA 1730888..1732330 (-) 1443 WP_001122336.1 sucrose phosphorylase -
  EL263_RS11870 - 1732541..1732681 (-) 141 WP_000692990.1 hypothetical protein -
  EL263_RS09190 (SPAT_1744) - 1732688..1733521 (-) 834 WP_000806561.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 665 a.a.        Molecular weight: 73134.04 Da        Isoelectric Point: 4.6154

>NTDB_id=71961 EL263_RS09170 WP_114880767.1 1726892..1728889(-) (amiA3) [Streptococcus pneumoniae strain ATCC 49619]
MNRGVENEKNRVFATAGLVLLAAGVLAACSSSKSSDSSAPKAYGYVYTADPETLDYLISSKNSTTVVTSNGIDGLFTNDN
YGNLAPAVAEDWEVSKDGLTYTYKIRKGVKWFTSDGEEYAEVTAKDFVNGLKHAADKKSEAMYLAENSVKGLADYLSGTS
TDFSTVGVKAVDDYTLQYTLNQPEPFWNSKLTYSIFWPLNEEFETSKGSDFAKPTDPTSLLYNGPFLLKGLTAKSSVEFV
KNEQYWDKENVHLDTINLAYYDGSDQESLERNFTSGAYSYARLYPTSSNYSKVAEEYKDNIYYTQSGSGIAGLGVNIDRQ
SYNYTSKTTDSEKVATKKALLNKDFRQALNFALDRSAYSAQINGKDGAALAVRNLFVKPDFVSAGEKTFGDLVAAQLPAY
GDEWKGVNLADGQDGLFNADKAKAEFAKAKKALEADGVQFPIHLDVPVDQASKNYISRIQSFKQSVETVLGVENVVVDIQ
QMTSDEFLNITYYAANASSEDWDVSGGVSWGPDYQDPSTYLDILKTTSSETTKTYLGFDNPNSPSVVQVGLKEYDKLVDE
AAKETSDLNVRYEKYAAAQAWLTDSSLFIPAMASSGAAPVLSRIVPFTGASAQTGSKGSDVYFKYLKLQDKVVTKEEYEK
AREKWLKEKAESNEKAQKELASHVK

Nucleotide


Download         Length: 1998 bp        

>NTDB_id=71961 EL263_RS09170 WP_114880767.1 1726892..1728889(-) (amiA3) [Streptococcus pneumoniae strain ATCC 49619]
ATAAACAGAGGAGTAGAAAATGAAAAAAATCGTGTATTTGCTACAGCAGGTCTTGTTTTATTAGCAGCAGGTGTACTTGC
AGCATGCAGTTCTTCAAAATCATCTGATTCATCAGCCCCTAAAGCTTATGGCTATGTTTATACAGCAGACCCAGAAACCT
TGGACTACCTGATTTCAAGTAAAAATAGTACAACAGTAGTGACTTCAAATGGGATTGATGGTTTATTCACTAACGATAAT
TACGGTAATCTTGCTCCTGCAGTTGCAGAGGATTGGGAAGTCTCTAAGGATGGTTTGACCTACACTTATAAGATTCGTAA
AGGGGTTAAATGGTTTACCTCTGATGGAGAAGAATATGCAGAGGTGACGGCTAAAGATTTCGTGAACGGTTTAAAACACG
CAGCAGATAAAAAATCAGAAGCTATGTATTTAGCTGAAAATTCGGTTAAAGGCTTGGCAGATTATCTATCAGGAACTTCA
ACAGATTTTTCAACAGTTGGTGTCAAGGCGGTTGATGATTATACGTTACAATACACTTTGAACCAGCCTGAACCGTTCTG
GAACTCTAAGTTGACCTATTCTATTTTCTGGCCTCTGAATGAAGAATTCGAAACATCAAAAGGAAGCGATTTTGCTAAAC
CAACAGATCCGACATCCTTGCTTTATAATGGTCCATTCTTGTTGAAAGGGTTGACTGCAAAATCTTCTGTAGAGTTTGTA
AAAAATGAGCAATATTGGGATAAAGAAAATGTCCACCTAGATACTATCAATCTAGCTTACTATGATGGATCAGATCAGGA
GTCGCTAGAGCGTAACTTCACTAGTGGAGCTTATAGTTATGCCCGTCTTTACCCTACCAGCTCCAACTATTCTAAGGTTG
CAGAAGAATACAAGGACAATATCTATTACACACAATCAGGCTCTGGGATTGCTGGTCTGGGTGTGAATATTGATCGCCAA
AGTTACAACTATACTTCTAAAACTACAGATTCAGAGAAAGTAGCTACTAAGAAGGCATTGCTTAACAAAGATTTCCGTCA
AGCCTTGAATTTTGCTCTTGATCGCTCAGCTTACTCAGCTCAAATCAATGGTAAAGATGGAGCAGCTTTAGCAGTTCGTA
ATTTATTTGTAAAACCAGACTTTGTTTCAGCTGGTGAGAAGACCTTTGGTGATTTAGTCGCTGCTCAACTTCCTGCTTAT
GGTGATGAGTGGAAAGGTGTGAATTTAGCTGATGGGCAGGATGGTTTATTCAATGCTGACAAGGCCAAGGCAGAGTTTGC
GAAAGCTAAGAAAGCTTTAGAAGCAGACGGCGTTCAGTTTCCTATTCATCTGGACGTTCCAGTAGACCAAGCATCAAAAA
ACTACATATCTCGTATTCAGTCCTTTAAACAATCTGTAGAAACAGTTCTTGGTGTTGAAAATGTCGTTGTTGATATTCAA
CAAATGACAAGTGATGAATTCCTTAATATTACTTACTATGCTGCCAATGCTTCATCTGAGGATTGGGATGTATCGGGAGG
AGTTTCATGGGGGCCAGACTATCAAGACCCATCTACTTACCTGGATATTTTAAAAACAACTAGCAGTGAAACTACAAAAA
CATATTTAGGATTTGATAATCCAAATAGCCCTTCAGTAGTTCAAGTTGGTTTGAAAGAATACGATAAATTAGTTGATGAA
GCTGCCAAAGAGACAAGCGACTTGAATGTCCGTTATGAAAAATATGCAGCGGCTCAAGCATGGTTGACAGATAGTTCACT
CTTTATTCCTGCTATGGCTTCTTCTGGTGCAGCACCAGTGCTTTCACGAATTGTTCCATTTACTGGAGCTTCTGCGCAAA
CAGGCTCTAAGGGGTCAGATGTTTACTTCAAATATTTGAAATTACAAGATAAAGTGGTGACTAAGGAAGAGTATGAAAAA
GCTCGTGAAAAATGGTTGAAAGAAAAAGCTGAATCAAATGAGAAAGCTCAAAAAGAATTGGCAAGTCATGTGAAGTAA

Domains

Predicted by InterProScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(84-528)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

66.768

99.098

0.662
  amiA3 Streptococcus thermophilus LMG 18311

66.616

99.098

0.66
  amiA Streptococcus salivarius strain HSISS4

66.717

98.947

0.66

Multiple sequence alignment