Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   EL263_RS09150 Genome accession   NZ_AP018938
Coordinates   1722390..1723316 (-) Length   308 a.a.
NCBI ID   WP_044812815.1    Uniprot ID   A0AA44MY67
Organism   Streptococcus pneumoniae strain ATCC 49619     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1717390..1728316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL263_RS09130 (SPAT_1732) treP 1717972..1719939 (-) 1968 WP_050221119.1 PTS system trehalose-specific EIIBC component -
  EL263_RS09135 (SPAT_1733) treR 1720124..1720834 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  EL263_RS09145 - 1720989..1722315 (+) 1327 Protein_1734 ISL3 family transposase -
  EL263_RS09150 (SPAT_1737) amiF 1722390..1723316 (-) 927 WP_044812815.1 ATP-binding cassette domain-containing protein Regulator
  EL263_RS09155 (SPAT_1738) amiE 1723327..1724394 (-) 1068 WP_000159553.1 ABC transporter ATP-binding protein Regulator
  EL263_RS09160 (SPAT_1739) amiD 1724403..1725329 (-) 927 WP_000103697.1 oligopeptide ABC transporter permease OppC Regulator
  EL263_RS09165 (SPAT_1740) amiC 1725329..1726825 (-) 1497 WP_000759902.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34799.85 Da        Isoelectric Point: 6.6224

>NTDB_id=71957 EL263_RS09150 WP_044812815.1 1722390..1723316(-) (amiF) [Streptococcus pneumoniae strain ATCC 49619]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGDIIFDGQKINGKKSRE
QAAELIRRIQMIFQDPAASLNERATVDYIISEGLYNHRLFKDEEERKEKVQSIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQALLSAVPIPDPILERKKVLKVYDPSQHDYETDKPSMVEIRPGHYVWANQTELARYQKGLN

Nucleotide


Download         Length: 927 bp        

>NTDB_id=71957 EL263_RS09150 WP_044812815.1 1722390..1723316(-) (amiF) [Streptococcus pneumoniae strain ATCC 49619]
ATGTCTGAAAAATTAGTAGAAATCAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
TGCTAACTTCTTTATCAACAAGGGAGAAACTTTCTCGCTTGTAGGTGAGTCCGGTAGTGGGAAAACAACTATTGGTCGTG
CTATCATCGGTCTAAATGATACAAGTAATGGAGATATCATTTTTGATGGTCAAAAGATTAATGGTAAGAAATCGCGTGAA
CAAGCTGCGGAATTGATTCGTCGAATCCAGATGATTTTCCAAGACCCTGCCGCAAGTTTGAATGAACGTGCGACTGTTGA
TTATATTATTTCTGAAGGTCTTTACAATCACCGTTTATTTAAGGATGAAGAAGAACGTAAAGAGAAAGTTCAAAGTATTA
TCCGTGAAGTAGGTCTTCTTGCTGAGCACTTGACTCGTTACCCTCATGAATTCTCAGGCGGTCAACGTCAACGTATCGGT
ATTGCCCGTGCCTTGGTCATGCAACCAGACTTTGTTATTGCAGATGAGCCAATTTCAGCCTTGGACGTTTCTGTACGTGC
CCAAGTCTTGAACTTGCTCAAAAAATTCCAAAAAGAGCTCGGCTTGACCTATCTCTTCATCGCCCATGACTTGTCGGTTG
TTCGCTTTATTTCAGATCGTATCGCAGTTATTTACAAGGGTGTTATTGTAGAGGTTGCAGAAACAGAAGAATTGTTTAAC
AATCCAATTCACCCATATACTCAAGCCTTGCTTTCAGCAGTACCAATCCCAGATCCAATCTTGGAACGTAAGAAGGTCTT
GAAGGTTTACGACCCAAGTCAACACGACTATGAGACTGATAAGCCGTCTATGGTAGAAATCCGTCCAGGTCACTATGTTT
GGGCGAACCAAACCGAATTGGCACGTTATCAAAAAGGACTAAACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

85.902

99.026

0.851
  amiF Streptococcus thermophilus LMD-9

85.574

99.026

0.847
  amiF Streptococcus salivarius strain HSISS4

85.246

99.026

0.844

Multiple sequence alignment