NTDB

Overview

Name	comM	Type	Machinery gene
Locus tag	NVV93_RS19290	Genome accession	NZ_CP102830
Coordinates	4287564..4289063 (+)	Length	499 a.a.
NCBI ID	WP_258252267.1	Uniprot ID	-
Organism	Pseudomonas sp. LS44
Function	DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4282564..4294063

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NVV93_RS19260 (NVV93_19260)	-	4283321..4284016 (+)	696	WP_258252262.1	HAD family hydrolase	-
NVV93_RS19265 (NVV93_19265)	sutA	4284089..4284418 (-)	330	WP_258252263.1	transcriptional regulator SutA	-
NVV93_RS19270 (NVV93_19270)	-	4284495..4284920 (-)	426	WP_258252264.1	secondary thiamine-phosphate synthase enzyme YjbQ	-
NVV93_RS19275 (NVV93_19275)	-	4285085..4286404 (-)	1320	WP_258252265.1	ammonium transporter	-
NVV93_RS19280 (NVV93_19280)	glnK	4286441..4286779 (-)	339	WP_003457590.1	P-II family nitrogen regulator	-
NVV93_RS19285 (NVV93_19285)	-	4287172..4287432 (+)	261	WP_258252266.1	accessory factor UbiK family protein	-
NVV93_RS19290 (NVV93_19290)	comM	4287564..4289063 (+)	1500	WP_258252267.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
NVV93_RS19295 (NVV93_19295)	-	4289179..4289712 (-)	534	WP_258252268.1	SRPBCC family protein	-
NVV93_RS19300 (NVV93_19300)	-	4289746..4290192 (-)	447	WP_258252269.1	nuclear transport factor 2 family protein	-
NVV93_RS19305 (NVV93_19305)	-	4290221..4291012 (-)	792	WP_258252270.1	DUF899 domain-containing protein	-
NVV93_RS19310 (NVV93_19310)	-	4291157..4291501 (-)	345	WP_258252271.1	YciI family protein	-
NVV93_RS19315 (NVV93_19315)	-	4291674..4292924 (-)	1251	WP_258252272.1	RNA polymerase sigma factor	-
NVV93_RS19320 (NVV93_19320)	-	4292999..4293919 (-)	921	WP_258254426.1	LysR substrate-binding domain-containing protein	-

Sequence

Protein

Download Length: 499 a.a. Molecular weight: 53067.08 Da Isoelectric Point: 7.9647

                                >NTDB_id=719159 NVV93_RS19290 WP_258252267.1 4287564..4289063(+) (comM) [Pseudomonas sp. LS44]

MSLAIVHSRALVGVEAPAVSVEAHLANGLPSLALVGLPETSVKESKDRVRSAILNSGFDFPPRRITLNLAPADLPKDGGR

FDLAIALGILAASGQVPGEALGELECLGELALSGAVRAVQGVLPAALAARAAGHTLIVPRANAEEASLASGLKVLAVDHL

LELAAHLNGSQPLMPYQAQGLLRRTPPYPDLAEVQGQHSAKRALLVAASGGHNLLLSGPPGTGKTLLASRLPGLLPPLDE

AEALEVAAIHSVASHAPLEAWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHQGVLFLDELPEFDRKVLEVLREPMES

GHIVIARARDKVRFPARFQLVAAMNPCPCGYLHDPSGRCRCTPEQIQRYRSKLSGPLLDRIDLHLTVARETTSLQAPPEP

GQDSASVAARVATARQLQMRRQGCANALLDLPGLRRHCLLSVEDQSWLEQACERLNLSLRAAHRLLKVARTLADLDQREA

IARAHLAEALQYRPSSALA

Nucleotide

Download Length: 1500 bp

                                >NTDB_id=719159 NVV93_RS19290 WP_258252267.1 4287564..4289063(+) (comM) [Pseudomonas sp. LS44]

ATGTCCCTGGCTATTGTTCACAGCCGTGCCCTGGTGGGCGTCGAAGCGCCCGCCGTCAGCGTCGAAGCCCATTTGGCCAA

CGGCTTGCCGTCGCTGGCCCTGGTCGGCCTGCCGGAAACCAGCGTGAAGGAAAGCAAGGACCGCGTGCGCAGCGCGATCC

TCAACTCCGGCTTCGATTTCCCGCCCCGCCGCATCACCCTCAACCTGGCTCCTGCCGACCTGCCCAAAGACGGTGGACGT

TTCGATTTGGCCATCGCCCTCGGGATTCTCGCCGCCAGCGGCCAGGTGCCTGGCGAGGCGCTTGGCGAGCTCGAGTGTCT

TGGCGAACTGGCGCTGTCCGGCGCGGTACGCGCAGTCCAGGGCGTGCTGCCGGCGGCGCTGGCCGCGCGCGCGGCGGGGC

ACACGCTGATCGTGCCGCGGGCGAATGCCGAGGAAGCCAGCCTGGCCTCGGGTCTCAAGGTGCTGGCCGTCGACCACCTG

TTGGAACTCGCCGCACACCTCAATGGCAGCCAGCCGCTAATGCCCTATCAGGCCCAGGGCCTGCTGCGGCGCACCCCGCC

GTATCCGGACCTGGCCGAAGTGCAGGGCCAGCACTCGGCCAAGCGCGCCCTGTTGGTCGCCGCCAGTGGCGGGCATAACC

TGCTGCTCAGCGGCCCGCCCGGCACCGGCAAAACCCTGTTGGCCAGTCGCCTGCCCGGGCTGCTGCCGCCCCTCGATGAA

GCTGAAGCGCTGGAGGTCGCGGCGATTCATTCGGTGGCCAGCCATGCCCCGCTGGAAGCCTGGCCGCAGCGACCGTTTCG

TCAGCCGCACCACAGCGCCTCCGGCCCGGCCCTGGTCGGCGGGGGCAGCCGGCCGCAGCCGGGGGAAATCACCCTGGCGC

ACCAAGGCGTATTGTTTCTCGACGAATTGCCGGAATTCGATCGCAAGGTGCTCGAGGTCCTGCGCGAACCCATGGAGTCC

GGCCACATCGTCATCGCCCGGGCGCGCGACAAGGTGCGCTTCCCGGCGCGCTTTCAATTGGTCGCGGCGATGAACCCCTG

TCCGTGTGGCTATCTGCACGATCCCAGCGGACGCTGCCGTTGCACCCCGGAACAGATCCAGCGCTATCGCAGCAAGCTGT

CCGGGCCGCTGCTCGATCGCATCGACCTGCACCTGACCGTGGCCCGCGAGACCACCTCGCTGCAGGCGCCGCCCGAACCC

GGCCAGGACAGCGCCAGCGTGGCCGCCCGCGTGGCAACGGCGCGGCAACTGCAGATGCGCCGCCAAGGCTGCGCCAACGC

GCTGCTCGACTTGCCCGGCCTGCGCCGGCATTGCCTGCTCAGCGTCGAGGACCAGAGCTGGCTGGAGCAAGCCTGCGAGC

GCCTTAATCTGTCCCTGCGCGCGGCCCATCGGCTGCTCAAAGTGGCCCGCACCCTGGCCGATCTAGACCAGCGCGAGGCC

ATCGCCCGAGCACACCTGGCCGAAGCGCTGCAATACCGACCGAGCAGCGCACTGGCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comM	Vibrio campbellii strain DS40M4	55.152	99.198	0.547
comM	Vibrio cholerae strain A1552	54.545	99.198	0.541
comM	Haemophilus influenzae Rd KW20	53.4	100	0.535
comM	Glaesserella parasuis strain SC1401	52.883	100	0.533
comM	Legionella pneumophila str. Paris	50.593	100	0.513
comM	Legionella pneumophila strain ERS1305867	50.593	100	0.513
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	45.418	100	0.457

Detailed information NTG0719159