Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   NVV93_RS02355 Genome accession   NZ_CP102830
Coordinates   510877..512943 (+) Length   688 a.a.
NCBI ID   WP_258252857.1    Uniprot ID   -
Organism   Pseudomonas sp. LS44     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 505877..517943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NVV93_RS02335 (NVV93_02335) pilM 508042..509106 (+) 1065 WP_258252854.1 pilus assembly protein PilM Machinery gene
  NVV93_RS02340 (NVV93_02340) pilN 509106..509678 (+) 573 WP_258252855.1 type 4a pilus biogenesis protein PilN -
  NVV93_RS02345 (NVV93_02345) pilO 509675..510298 (+) 624 WP_258252856.1 type 4a pilus biogenesis protein PilO -
  NVV93_RS02350 (NVV93_02350) pilP 510328..510822 (+) 495 WP_258254269.1 type 4a pilus biogenesis lipoprotein PilP -
  NVV93_RS02355 (NVV93_02355) pilQ 510877..512943 (+) 2067 WP_258252857.1 type IV pilus secretin PilQ Machinery gene
  NVV93_RS02360 (NVV93_02360) aroK 512948..513466 (+) 519 WP_258252858.1 shikimate kinase AroK -
  NVV93_RS02365 (NVV93_02365) aroB 513518..514615 (+) 1098 WP_258252859.1 3-dehydroquinate synthase -
  NVV93_RS02370 (NVV93_02370) - 514634..516244 (+) 1611 WP_258252860.1 AAA family ATPase -

Sequence

Protein


Download         Length: 688 a.a.        Molecular weight: 74194.24 Da        Isoelectric Point: 4.8422

>NTDB_id=719136 NVV93_RS02355 WP_258252857.1 510877..512943(+) (pilQ) [Pseudomonas sp. LS44]
MNGSISRLCISFLAVFLSPIAMAANLEALDVAALPGDRVELKLAFDAPVAAPRGYTIEQPARIALDLPGVKNGLGAKNRE
LGVGNARSITVVEAKDRTRLIINLATLAPYSTRAEGNTLYVVVGEGSAASAPAASIPAASPVAAKKTYASIGRAISNIDF
QRGEQGEGNVVIELSDPSVSPDIQEQGGKIRLDFVRTQLPENLRVRLDVKDFATPVQFVSAAGTGDKASITIEPSGFYDY
LAYQTDNKLTISIKPLTQQDVEKRKNESFAYNGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVQGNITLRLQNVPWD
QALDLVLKTKGLDKRKVGNVLLVAPADEIAARERQELESQKQIAELAPLRRELIQVNYAKATDISKLFQSVTSGDASKDE
RGSITVDDRTNSIIAYQTQDKLDELRRIVSQLDIPVRQVMIEARIVEANVDYDKSLGVEWRGVGIGDNNWVVGGSNSLLS
ANPARSPLTNAGTFVDMGANAATSGLNLGFITDNTILDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGAEVPYQEAS
SSGATSTSFKEAALSLEVTPQITPDNRVIMEVKVTKDEPDFANALNGVPPIKKNEVNAKVLVSDGETIVIGGVFSNTQTK
SVDKVPFLGDLPFLGRLFKRDTVTDRKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 2067 bp        

>NTDB_id=719136 NVV93_RS02355 WP_258252857.1 510877..512943(+) (pilQ) [Pseudomonas sp. LS44]
ATGAACGGCTCTATTTCGCGCCTCTGTATTTCTTTTTTGGCGGTATTTTTATCGCCAATCGCAATGGCTGCAAATCTTGA
AGCGCTAGATGTTGCAGCGTTGCCGGGAGATCGTGTCGAGTTAAAGTTAGCTTTTGACGCTCCTGTAGCGGCTCCGCGGG
GCTATACGATTGAGCAACCGGCGCGAATCGCTCTGGACCTTCCTGGGGTAAAAAATGGGTTGGGCGCAAAGAATCGTGAG
TTAGGTGTCGGTAACGCGCGCAGCATCACCGTGGTTGAAGCCAAAGACCGGACCCGTTTAATTATCAACCTCGCTACTTT
GGCCCCGTATAGCACTAGGGCCGAAGGCAATACTTTATATGTGGTCGTCGGTGAAGGCTCCGCTGCTTCTGCGCCGGCGG
CAAGTATCCCCGCCGCCTCCCCAGTAGCGGCAAAAAAGACTTATGCGTCAATAGGTCGGGCGATCAGTAATATAGATTTT
CAACGCGGCGAGCAGGGCGAGGGCAATGTGGTTATCGAGCTTTCCGATCCATCGGTAAGCCCAGACATTCAGGAGCAAGG
TGGCAAAATCCGATTGGATTTCGTGCGAACGCAGTTGCCAGAAAATCTCCGCGTTCGCTTGGACGTTAAGGATTTTGCTA
CTCCAGTTCAGTTCGTGAGTGCTGCCGGTACTGGCGATAAGGCAAGTATCACTATTGAGCCGAGCGGTTTCTATGACTAC
CTGGCTTATCAGACTGATAACAAATTGACCATAAGTATCAAGCCGTTGACCCAGCAAGATGTCGAAAAGCGAAAAAATGA
AAGCTTTGCCTACAACGGCGAAAAGCTATCGCTCAACTTTCAAGATATCGATGTCCGCTCAGTCCTTCAGTTGATTGCTG
ATTTTACCGATTTGAACCTCGTCGCCAGCGACACTGTCCAGGGCAATATTACTTTGCGCTTGCAGAATGTCCCGTGGGAC
CAGGCCCTGGATCTAGTACTTAAGACAAAAGGTTTGGATAAACGCAAGGTCGGAAACGTTCTTCTGGTTGCACCGGCTGA
TGAAATAGCCGCCCGCGAAAGACAGGAATTAGAATCGCAGAAGCAAATTGCTGAATTGGCCCCTCTTCGTCGAGAGCTTA
TTCAAGTTAACTATGCTAAAGCGACAGATATATCGAAGTTGTTTCAATCGGTAACAAGCGGCGATGCAAGTAAAGATGAG
CGTGGTTCGATTACTGTTGATGATCGCACCAATAGCATCATCGCGTATCAAACTCAGGATAAGCTCGACGAGTTGCGGCG
GATCGTTTCGCAGTTGGATATTCCGGTTCGTCAGGTAATGATTGAGGCGCGCATCGTTGAGGCGAATGTTGATTATGACA
AATCGCTTGGTGTCGAATGGCGTGGGGTTGGCATTGGTGACAATAATTGGGTGGTCGGCGGCTCGAACAGCTTGCTCAGC
GCCAATCCGGCGCGGAGTCCGTTGACCAATGCCGGAACCTTCGTAGATATGGGCGCGAATGCGGCGACTTCTGGCCTGAA
CTTGGGGTTCATCACTGATAACACCATTCTTGATTTGGAGTTGTCGGCAATGGAAAAAACCGGTAACGGTGAGATTGTGT
CGCAACCAAAAGTTGTTACATCGGACAAGGAAACAGCGAAGATCCTTAAAGGAGCTGAGGTTCCGTATCAGGAGGCCAGC
TCCAGTGGTGCTACTAGTACTTCCTTCAAGGAGGCGGCGCTTTCGTTGGAAGTGACCCCGCAAATCACTCCTGATAACCG
TGTCATTATGGAAGTGAAAGTTACCAAGGATGAACCGGACTTCGCTAATGCACTGAATGGCGTTCCGCCAATCAAGAAGA
ACGAAGTTAATGCAAAGGTTCTAGTCAGCGACGGCGAAACCATAGTCATCGGTGGGGTGTTCTCCAACACTCAAACCAAA
TCTGTGGATAAAGTTCCATTCCTTGGGGATCTACCCTTCCTTGGGCGTCTATTCAAGCGGGATACTGTTACCGATAGAAA
ATCTGAACTGTTGGTGTTCTTGACGCCGCGGATCATGAATAACCAGGCCATCGCAGTGAGCCGTTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(299-345)

Bacterial type II/III secretion system short domain (Secretin_N)

(373-438)

Bacterial type II and III secretion system protein (Secretin)

(523-679)

AMIN domain (AMIN)

(39-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

76.045

100

0.794
  comQ Acinetobacter baylyi ADP1

42.836

100

0.43
  pilQ Acinetobacter baumannii strain A118

39.973

100

0.423
  pilQ Acinetobacter baumannii D1279779

39.973

100

0.423
  pilQ Legionella pneumophila strain Lp02

38.348

98.547

0.378
  pilQ Legionella pneumophila strain ERS1305867

38.348

98.547

0.378