Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   NVV93_RS01605 Genome accession   NZ_CP102830
Coordinates   345964..346371 (+) Length   135 a.a.
NCBI ID   WP_258252720.1    Uniprot ID   -
Organism   Pseudomonas sp. LS44     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 340964..351371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NVV93_RS01575 (NVV93_01575) - 341095..342108 (-) 1014 WP_258252714.1 aspartate carbamoyltransferase catalytic subunit -
  NVV93_RS01580 (NVV93_01580) pyrR 342120..342635 (-) 516 WP_258252715.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  NVV93_RS01585 (NVV93_01585) ruvX 342714..343148 (-) 435 WP_375162900.1 Holliday junction resolvase RuvX -
  NVV93_RS01590 (NVV93_01590) - 343148..343717 (-) 570 WP_258252717.1 YqgE/AlgH family protein -
  NVV93_RS01595 (NVV93_01595) - 343760..344653 (-) 894 WP_258252718.1 energy transducer TonB -
  NVV93_RS01600 (NVV93_01600) gshB 344762..345715 (-) 954 WP_258252719.1 glutathione synthase -
  NVV93_RS01605 (NVV93_01605) pilG 345964..346371 (+) 408 WP_258252720.1 twitching motility response regulator PilG Regulator
  NVV93_RS01610 (NVV93_01610) pilH 346414..346779 (+) 366 WP_258252721.1 twitching motility response regulator PilH -
  NVV93_RS01615 (NVV93_01615) - 346824..347360 (+) 537 WP_258252722.1 chemotaxis protein CheW -
  NVV93_RS01620 (NVV93_01620) - 347453..349501 (+) 2049 WP_258252723.1 methyl-accepting chemotaxis protein -
  NVV93_RS01625 (NVV93_01625) - 349565..350425 (+) 861 WP_258252724.1 protein-glutamate O-methyltransferase CheR -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14781.18 Da        Isoelectric Point: 6.7128

>NTDB_id=719134 NVV93_RS01605 WP_258252720.1 345964..346371(+) (pilG) [Pseudomonas sp. LS44]
MEQHSEGLRVMVIDDSKTIRRTAETLLKKVGCDVITAVDGFDALAKIADTHPSIIFVDIMMPRLDGYQTCALIKNNSAFK
GTPVIMLSSKDGLFDKAKGRIVGSDQYLTKPFSKEELLGAIKAHVPEFVPVEQAS

Nucleotide


Download         Length: 408 bp        

>NTDB_id=719134 NVV93_RS01605 WP_258252720.1 345964..346371(+) (pilG) [Pseudomonas sp. LS44]
ATGGAACAGCATTCCGAAGGTTTGAGGGTCATGGTGATCGACGATTCAAAGACGATTCGTCGCACTGCTGAGACTCTGCT
CAAGAAAGTGGGGTGTGACGTTATCACTGCGGTCGACGGCTTCGATGCCCTGGCCAAGATTGCCGATACCCACCCCAGTA
TCATTTTCGTCGACATCATGATGCCGCGGCTCGACGGTTATCAGACCTGCGCGTTGATCAAAAATAACAGCGCATTCAAA
GGTACGCCGGTGATCATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCTAAGGGCCGTATCGTCGGCTCCGATCAGTA
CCTCACCAAACCTTTTAGTAAGGAAGAGCTGCTGGGTGCAATAAAAGCCCACGTGCCGGAGTTCGTTCCGGTAGAACAAG
CTTCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.2

92.593

0.696
  vicR Streptococcus mutans UA159

42.063

93.333

0.393