Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   NVV93_RS03625 Genome accession   NZ_CP102830
Coordinates   820335..821675 (-) Length   446 a.a.
NCBI ID   WP_258253095.1    Uniprot ID   -
Organism   Pseudomonas sp. LS44     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 815335..826675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NVV93_RS03600 (NVV93_03600) pilV 815816..816340 (-) 525 WP_258253091.1 type IV pilus modification protein PilV -
  NVV93_RS03605 (NVV93_03605) - 816349..816828 (-) 480 WP_258253092.1 GspH/FimT family pseudopilin -
  NVV93_RS03610 (NVV93_03610) - 816979..817488 (-) 510 WP_258253093.1 GspH/FimT family pseudopilin -
  NVV93_RS03615 (NVV93_03615) thiO 817662..818744 (+) 1083 WP_258254279.1 glycine oxidase ThiO -
  NVV93_RS03620 (NVV93_03620) - 818855..819826 (-) 972 WP_258253094.1 IS110 family transposase -
  NVV93_RS03625 (NVV93_03625) pilR 820335..821675 (-) 1341 WP_258253095.1 sigma-54 dependent transcriptional regulator Regulator
  NVV93_RS03630 (NVV93_03630) pilS 821679..823271 (-) 1593 WP_258253096.1 PAS domain-containing sensor histidine kinase Regulator
  NVV93_RS03635 (NVV93_03635) - 823261..823491 (-) 231 WP_258253097.1 envelope stress response protein PspG -
  NVV93_RS03640 (NVV93_03640) - 823658..825289 (+) 1632 WP_258253098.1 NAD+ synthase -
  NVV93_RS03645 (NVV93_03645) - 825365..826384 (-) 1020 WP_258253099.1 outer membrane protein assembly factor BamD -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49953.41 Da        Isoelectric Point: 5.7886

>NTDB_id=719137 NVV93_RS03625 WP_258253095.1 820335..821675(-) (pilR) [Pseudomonas sp. LS44]
MANRQRALIVDDEPDIRELLEITLGRMRLDTRSARNVKEAREWLAREPFDLCLTDMRLPDGTGLELVQHIQQRHPQVPVA
MITAYGSLDTAINALKAGAFDFLTKPVDLGRLRELVATALRIRAPGEEELPVDSRLLGDSPPMRALRKQILKLARSQAPV
YISGESGSGKELVARLIHEQGPRTELPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAANGGTLFLDEVADL
PLPMQVKLLRAIQEKAIRSVGGQQEQIVDVRILCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIPLLAEV
MLKRLAEGIGQAPATLTADAQEKLKSYRFPGNVRELENMLERAHTLCDDDQIQVHDLRLAESVGALEGGEASLAQIDNLE
DYLEDLERKLITQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=719137 NVV93_RS03625 WP_258253095.1 820335..821675(-) (pilR) [Pseudomonas sp. LS44]
ATGGCCAACCGACAACGCGCCCTGATCGTCGATGACGAGCCCGACATTCGCGAACTGCTGGAAATCACCCTCGGGCGCAT
GCGCCTGGATACGCGCAGTGCGCGCAACGTCAAGGAGGCCCGCGAGTGGCTGGCGCGCGAACCCTTCGACCTGTGCCTGA
CCGACATGCGTCTGCCCGACGGCACCGGCCTCGAACTGGTCCAGCATATCCAGCAGCGGCACCCGCAAGTACCAGTGGCG
ATGATTACCGCCTATGGCAGCCTGGATACGGCGATCAATGCCCTCAAGGCCGGAGCGTTCGACTTCTTGACCAAACCGGT
CGACCTCGGTCGTTTGCGCGAGCTGGTCGCCACCGCGCTACGTATACGCGCGCCCGGCGAAGAGGAATTGCCCGTCGACA
GCCGGCTGCTCGGCGACTCGCCACCGATGCGCGCCCTGCGCAAGCAGATCCTCAAACTCGCGCGCAGTCAGGCCCCCGTT
TACATCAGCGGCGAGTCGGGTAGCGGCAAGGAGTTAGTGGCACGGCTTATTCATGAACAGGGCCCACGCACCGAATTGCC
CTTCGTGCCGGTCAACTGCGGCGCGATCCCTTCCGAACTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGTAGCTTCA
CCGGCGCCATCGAAGACAAGCAAGGGCTCTTTCAGGCCGCCAACGGCGGCACCCTGTTTCTCGATGAAGTCGCCGACCTG
CCCTTGCCAATGCAGGTGAAGCTGCTGCGCGCCATTCAGGAAAAAGCCATCCGCTCGGTCGGCGGGCAACAGGAACAAAT
CGTCGATGTGCGCATCCTCTGCGCCACGCACAAAGACCTCGCCGCCGAGGTAGCCGCCGGCCGTTTCCGCCAAGACCTCT
ACTACCGTCTCAATGTCATCGAACTGCGCGTTCCACCGCTGCGCGAACGCCGCGAAGACATTCCACTCCTGGCCGAAGTG
ATGCTCAAGCGGCTGGCCGAAGGCATCGGCCAAGCTCCCGCCACACTCACTGCCGATGCCCAGGAAAAACTCAAGAGCTA
CCGTTTCCCAGGCAACGTACGCGAGCTGGAAAACATGCTCGAACGCGCCCATACGCTGTGCGACGACGACCAGATCCAGG
TTCACGATCTGCGTCTGGCCGAATCCGTCGGTGCCTTGGAAGGCGGGGAAGCAAGCCTGGCGCAAATCGATAACTTGGAG
GATTACCTCGAAGACCTGGAGCGAAAATTGATCACCCAAGCGCTCGAGGAAACTCGCTGGAATCGTACTGCTGCAGCACA
ACGCTTGGGCCTGACCTTCCGCTCAATGCGTTATCGACTGAAGAAACTGGGGATCGATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Response regulator receiver domain (Response_reg)

(8-116)

Sigma-54 interaction domain (Sigma54_activat)

(137-302)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

88.063

99.552

0.877
  pilR Acinetobacter baumannii strain A118

49.785

100

0.52