Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   NVV93_RS03630 Genome accession   NZ_CP102830
Coordinates   821679..823271 (-) Length   530 a.a.
NCBI ID   WP_258253096.1    Uniprot ID   -
Organism   Pseudomonas sp. LS44     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 816679..828271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NVV93_RS03610 (NVV93_03610) - 816979..817488 (-) 510 WP_258253093.1 GspH/FimT family pseudopilin -
  NVV93_RS03615 (NVV93_03615) thiO 817662..818744 (+) 1083 WP_258254279.1 glycine oxidase ThiO -
  NVV93_RS03620 (NVV93_03620) - 818855..819826 (-) 972 WP_258253094.1 IS110 family transposase -
  NVV93_RS03625 (NVV93_03625) pilR 820335..821675 (-) 1341 WP_258253095.1 sigma-54 dependent transcriptional regulator Regulator
  NVV93_RS03630 (NVV93_03630) pilS 821679..823271 (-) 1593 WP_258253096.1 PAS domain-containing sensor histidine kinase Regulator
  NVV93_RS03635 (NVV93_03635) - 823261..823491 (-) 231 WP_258253097.1 envelope stress response protein PspG -
  NVV93_RS03640 (NVV93_03640) - 823658..825289 (+) 1632 WP_258253098.1 NAD+ synthase -
  NVV93_RS03645 (NVV93_03645) - 825365..826384 (-) 1020 WP_258253099.1 outer membrane protein assembly factor BamD -
  NVV93_RS03650 (NVV93_03650) rluD 826534..827508 (+) 975 WP_258253100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  NVV93_RS03655 (NVV93_03655) pgeF 827498..828241 (+) 744 WP_258253101.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58649.57 Da        Isoelectric Point: 7.1267

>NTDB_id=719138 NVV93_RS03630 WP_258253096.1 821679..823271(-) (pilS) [Pseudomonas sp. LS44]
MIAETLQLSNDQGQRIFRLYNLYRLTIGLALVLLISSELDDQLLELASPQLFSYGSWLYLILNMLVAALVQRPKHLLPVF
TLALLDVIALSGLFYAAGGTPSGIGNLLIVAVAIANILLRGRIGLLIAAMAAIGLIYLTFYLSLSRPAASAQYVQAGALG
ALCFAAALFVQGLTKRLQYSEGLAAQRAADVANLEALNEQILQRMRTGILVLDTHHRVLLANQGARSLLGQDALTGQALD
PHCPELVKRLQQWCDNPTLRPASLQTQADGPALQPSFVSLQRGEQQHTLVFLDDISQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLQESEDLQGPDQRLAQIIQDHSRRMNLVIENVLQLSRRRQAEPQLMDLKYWLHRFAGEFRSALPNN
QQLHVVTDTGTLQTRMDPHQLTQVLTNLVQNGLRYSAQRNPYGQVWLQLFRDAESDLPVLEVLDDGPGVPPEQVQHIFEP
FYTTENKGTGLGLYISRELCESNQARLDYKPREVGGSCFRITFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=719138 NVV93_RS03630 WP_258253096.1 821679..823271(-) (pilS) [Pseudomonas sp. LS44]
GTGATCGCTGAGACCCTGCAGCTGAGCAACGATCAAGGCCAGCGGATTTTTCGTCTCTACAACCTTTACCGACTGACCAT
CGGCCTGGCGTTGGTGCTGCTGATCTCCAGTGAGCTGGACGATCAACTACTCGAGTTGGCCAGCCCGCAACTGTTTAGCT
ACGGCAGCTGGCTGTACCTGATCCTCAACATGCTGGTGGCGGCACTGGTGCAGCGGCCGAAACACCTGTTGCCGGTGTTC
ACTCTGGCCTTGCTCGATGTGATCGCGCTGTCCGGCCTGTTCTACGCGGCCGGCGGCACGCCCAGCGGGATTGGCAACCT
GTTGATTGTCGCCGTGGCGATCGCCAACATTCTCCTGCGCGGGCGCATCGGTCTGCTGATCGCGGCGATGGCAGCCATCG
GCCTGATTTATCTCACCTTTTATCTCAGCCTCAGCCGTCCGGCTGCCTCCGCGCAATACGTGCAAGCGGGTGCGCTGGGA
GCGCTGTGTTTCGCCGCCGCACTGTTCGTCCAAGGTTTGACTAAGCGCCTGCAATACAGCGAAGGCCTTGCCGCCCAACG
TGCCGCCGACGTCGCTAACCTGGAAGCGCTCAACGAGCAGATTTTGCAGCGTATGCGCACCGGCATTCTGGTGCTTGACA
CCCACCATCGCGTGCTGCTTGCCAACCAGGGCGCGCGCAGCCTGCTTGGCCAAGATGCACTGACTGGCCAGGCTCTCGAC
CCGCACTGCCCGGAGCTGGTCAAACGCCTGCAGCAGTGGTGCGACAATCCAACCTTGCGTCCCGCCAGCCTACAAACGCA
GGCCGATGGCCCAGCCCTGCAGCCCAGCTTCGTCTCCCTGCAGCGTGGTGAGCAGCAACATACCCTGGTGTTTCTCGATG
ACATCTCGCAAATCGCCCAGCAAGCGCAGCAACTCAAACTCGCCGCGCTCGGTCGCTTGACCGCTGGAATTGCCCATGAA
ATCCGCAATCCGTTGGGCGCCATCAGCCATGCTGCACAGTTGCTGCAGGAGTCGGAAGACTTGCAGGGGCCGGACCAACG
CCTGGCGCAGATCATTCAGGACCATTCGCGACGGATGAATCTGGTGATCGAAAACGTCCTGCAGCTGTCCCGCCGCCGCC
AGGCCGAGCCGCAGCTAATGGATCTGAAATATTGGCTGCACCGTTTCGCCGGCGAGTTTCGTAGCGCGCTGCCGAACAAT
CAGCAGCTGCATGTAGTAACCGACACCGGCACCCTGCAGACCCGCATGGACCCGCACCAGCTAACCCAGGTACTGACCAA
CCTGGTGCAGAATGGTTTGCGCTACAGCGCCCAGCGCAATCCATATGGACAAGTCTGGCTGCAGCTGTTTCGCGACGCGG
AAAGCGATCTGCCGGTGCTCGAAGTCCTGGATGACGGTCCCGGTGTACCACCCGAGCAGGTGCAGCATATCTTCGAGCCG
TTCTACACCACCGAAAACAAAGGGACCGGTCTCGGCCTGTATATTTCTCGCGAGCTGTGCGAAAGCAACCAGGCCCGTCT
CGATTACAAACCGCGCGAAGTGGGCGGCAGCTGTTTCCGCATTACCTTCGCCCATCCACGCAAGCTGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

68.491

100

0.685