Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NTU39_RS03560 Genome accession   NZ_CP102780
Coordinates   691947..692465 (+) Length   172 a.a.
NCBI ID   WP_257959209.1    Uniprot ID   -
Organism   Pandoraea commovens strain LB-19-202-79     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 686947..697465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NTU39_RS03550 (NTU39_03550) uvrA 687368..690232 (-) 2865 WP_150665384.1 excinuclease ABC subunit UvrA -
  NTU39_RS03555 (NTU39_03555) - 690753..691916 (+) 1164 WP_150665385.1 MFS transporter -
  NTU39_RS03560 (NTU39_03560) ssb 691947..692465 (+) 519 WP_257959209.1 single-stranded DNA-binding protein Machinery gene
  NTU39_RS03565 (NTU39_03565) - 692667..693875 (+) 1209 WP_257959210.1 glycosyltransferase -
  NTU39_RS03570 (NTU39_03570) - 693886..694587 (+) 702 WP_257959211.1 polysaccharide deacetylase family protein -
  NTU39_RS03575 (NTU39_03575) - 694749..697091 (+) 2343 WP_257959212.1 patatin-like phospholipase family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 17945.66 Da        Isoelectric Point: 5.3258

>NTDB_id=718989 NTU39_RS03560 WP_257959209.1 691947..692465(+) (ssb) [Pandoraea commovens strain LB-19-202-79]
MASVNKVILVGNLGADPEVRYMPSGDAVANIRLATTDRYKDKQSGEFKEMTEWHRVSFFGRLAEIVNEYLKKGSSVYIEG
RIRTRKYQAQDGTERYSTEIVADQMQMLGGRSGGGEGGGGGGYSRGGGGDEGGGGGYSRGGGGGGGGGGARQQAPAKQSG
GGFDDMDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=718989 NTU39_RS03560 WP_257959209.1 691947..692465(+) (ssb) [Pandoraea commovens strain LB-19-202-79]
ATGGCATCAGTCAACAAAGTGATTTTGGTCGGCAATCTGGGTGCCGACCCCGAAGTCCGCTACATGCCGAGCGGCGATGC
GGTTGCGAACATTCGTCTGGCGACGACCGACCGTTACAAGGACAAGCAGTCCGGCGAATTCAAGGAAATGACGGAATGGC
ACCGTGTGTCGTTCTTCGGCCGTCTGGCGGAGATCGTCAACGAGTACCTGAAGAAGGGCTCGTCGGTGTACATCGAAGGC
CGTATCCGTACGCGCAAGTACCAAGCGCAGGACGGCACGGAGCGTTACAGCACGGAAATCGTGGCTGACCAGATGCAGAT
GCTGGGTGGCCGTAGCGGCGGCGGTGAAGGTGGCGGCGGTGGCGGCTACTCGCGCGGCGGTGGTGGCGACGAAGGCGGTG
GCGGCGGTTACTCGCGCGGCGGCGGCGGCGGCGGTGGCGGCGGCGGTGCCCGTCAGCAAGCCCCGGCCAAGCAATCCGGC
GGCGGTTTCGACGACATGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50

100

0.547
  ssb Glaesserella parasuis strain SC1401

49.444

100

0.517
  ssb Neisseria meningitidis MC58

45.198

100

0.465
  ssb Neisseria gonorrhoeae MS11

45.198

100

0.465
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.778

100

0.395