Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NTU39_RS02805 Genome accession   NZ_CP102780
Coordinates   530085..530750 (-) Length   221 a.a.
NCBI ID   WP_308340642.1    Uniprot ID   -
Organism   Pandoraea commovens strain LB-19-202-79     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 525085..535750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NTU39_RS02780 (NTU39_02780) - 525471..526820 (+) 1350 WP_150664224.1 sigma-54 dependent transcriptional regulator -
  NTU39_RS02785 (NTU39_02785) - 526885..527595 (-) 711 WP_257959151.1 carbonic anhydrase -
  NTU39_RS02790 (NTU39_02790) - 527942..528466 (-) 525 WP_150664112.1 TlpA disulfide reductase family protein -
  NTU39_RS02795 (NTU39_02795) - 528564..529223 (-) 660 WP_246184531.1 hypothetical protein -
  NTU39_RS02800 (NTU39_02800) - 529394..529942 (+) 549 WP_150664113.1 hypothetical protein -
  NTU39_RS02805 (NTU39_02805) comM 530085..530750 (-) 666 WP_308340642.1 ATP-binding protein Machinery gene
  NTU39_RS02810 (NTU39_02810) - 530794..531459 (+) 666 WP_257959152.1 TnsA endonuclease N-terminal domain-containing protein -
  NTU39_RS02815 (NTU39_02815) - 531461..533332 (+) 1872 WP_257959153.1 Mu transposase C-terminal domain-containing protein -
  NTU39_RS02820 (NTU39_02820) - 533341..534231 (+) 891 WP_257959154.1 TniB family NTP-binding protein -
  NTU39_RS26975 - 534285..535403 (+) 1119 WP_373275388.1 TniQ family protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24298.63 Da        Isoelectric Point: 7.4666

>NTDB_id=718986 NTU39_RS02805 WP_308340642.1 530085..530750(-) (comM) [Pandoraea commovens strain LB-19-202-79]
MEITRGSTPRPGEISLAHRGVLFLDELPEFQRRVLEVLREPLELGHVTISRAGGHATFPAAFQLVAAMNPCPCGDLGHPS
RNCRCTSDAVARYRNRLSGPLLDRIDLHVEVPALSAETFAAPATGEHSEVVAMRVRQAQTRQLARQGQLNCGLSNRALEA
QCPLQPEAQEVLHRAVTQHHWSARTYHRVLRVARTIADLAGCDAIDAFHIAEAVQYREAPG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=718986 NTU39_RS02805 WP_308340642.1 530085..530750(-) (comM) [Pandoraea commovens strain LB-19-202-79]
GTGGAAATTACACGCGGAAGCACGCCGCGTCCGGGAGAGATCAGTCTGGCGCATCGCGGCGTGTTGTTCCTCGACGAATT
GCCGGAGTTTCAGCGTCGTGTCCTGGAAGTGCTGCGCGAACCGCTGGAACTGGGGCACGTCACGATTTCTCGCGCAGGGG
GACACGCCACGTTTCCCGCAGCCTTTCAACTCGTGGCGGCGATGAACCCGTGTCCATGCGGGGATCTGGGGCACCCGTCG
CGCAACTGCCGATGCACGAGCGACGCGGTGGCCCGTTACCGCAATCGCCTGTCGGGCCCACTGCTCGATCGCATCGACCT
GCATGTGGAAGTACCCGCGCTTAGCGCGGAGACGTTCGCCGCCCCGGCCACCGGCGAGCACAGCGAAGTCGTGGCGATGC
GCGTGAGGCAAGCGCAGACGCGCCAGCTGGCGCGTCAGGGTCAGTTGAACTGCGGTCTGTCGAATCGAGCGCTTGAAGCG
CAATGTCCATTGCAACCGGAAGCGCAGGAGGTTCTGCACCGCGCGGTGACGCAACATCACTGGTCGGCACGCACTTACCA
CCGGGTGTTGCGCGTGGCGCGCACCATTGCGGACCTCGCCGGGTGCGACGCGATCGATGCGTTTCACATCGCCGAGGCGG
TGCAATATCGAGAGGCACCGGGGTGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(6-117)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(125-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

51.643

96.38

0.498
  comM Legionella pneumophila str. Paris

50.23

98.19

0.493
  comM Legionella pneumophila strain ERS1305867

50.23

98.19

0.493
  comM Vibrio cholerae strain A1552

50.704

96.38

0.489
  comM Glaesserella parasuis strain SC1401

49.533

96.833

0.48
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.222

97.738

0.462
  comM Haemophilus influenzae Rd KW20

47.418

96.38

0.457