Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG/cglG   Type   Machinery gene
Locus tag   EL271_RS10150 Genome accession   NZ_AP018937
Coordinates   1855507..1855920 (-) Length   137 a.a.
NCBI ID   WP_050295052.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain HU-OH     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1850507..1860920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL271_RS10125 (SPOH_1881) - 1851202..1852026 (-) 825 WP_001809383.1 membrane protein insertase YidC -
  EL271_RS10130 (SPOH_1882) rnpA 1852001..1852372 (-) 372 WP_000739244.1 ribonuclease P protein component -
  EL271_RS12015 - 1852389..1852520 (-) 132 WP_000768904.1 hypothetical protein -
  EL271_RS10135 (SPOH_1883) - 1852521..1853711 (-) 1191 WP_000167765.1 acetate kinase -
  EL271_RS10140 (SPOH_1884) comYH 1853762..1854715 (-) 954 WP_000345099.1 class I SAM-dependent methyltransferase Machinery gene
  EL271_RS10145 - 1854776..1855370 (-) 595 Protein_1869 class I SAM-dependent methyltransferase -
  EL271_RS10150 (SPOH_1887) comGG/cglG 1855507..1855920 (-) 414 WP_050295052.1 competence type IV pilus minor pilin ComGG Machinery gene
  EL271_RS10155 (SPOH_1888) comGF/cglF 1855898..1856359 (-) 462 WP_000250542.1 competence type IV pilus minor pilin ComGF Machinery gene
  EL271_RS10160 (SPOH_1889) comGE/cglE 1856322..1856624 (-) 303 WP_269471257.1 competence type IV pilus minor pilin ComGE Machinery gene
  EL271_RS10165 (SPOH_1890) comGD/cglD 1856587..1856991 (-) 405 WP_000588013.1 competence type IV pilus minor pilin ComGD Machinery gene
  EL271_RS10170 (SPOH_1891) comGC/cglC 1856984..1857310 (-) 327 WP_000738636.1 comG operon protein ComGC Machinery gene
  EL271_RS10175 (SPOH_1892) comGB/cglB 1857312..1858328 (-) 1017 WP_074017570.1 competence type IV pilus assembly protein ComGB Machinery gene
  EL271_RS10180 (SPOH_1893) comGA/cglA/cilD 1858276..1859217 (-) 942 WP_000249552.1 competence type IV pilus ATPase ComGA Machinery gene
  EL271_RS10185 (SPOH_1894) - 1859293..1859658 (-) 366 WP_000286415.1 DUF1033 family protein -
  EL271_RS10190 (SPOH_1895) - 1859809..1860867 (-) 1059 WP_000649468.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence


Protein


Download         Length: 137 a.a.        Molecular weight: 16015.52 Da        Isoelectric Point: 10.2472

>NTDB_id=71898 EL271_RS10150 WP_050295052.1 1855507..1855920(-) (comGG/cglG) [Streptococcus pneumoniae strain HU-OH]
MWKKKKVKAGVLLYAVTIAAIFSLLLQFYLNRQVAHYQDYALNKEKLVAFAMAKRTKDKVEQESGEQVFNLGQVSYQNKK
TGLVTRVRTDKSQYEFLFPSVKIKEEKRDKKEEVATDSSEKVEKKKSEEKPEKKENF

Nucleotide


Download         Length: 414 bp        

>NTDB_id=71898 EL271_RS10150 WP_050295052.1 1855507..1855920(-) (comGG/cglG) [Streptococcus pneumoniae strain HU-OH]
GTGTGGAAAAAGAAAAAAGTTAAGGCAGGTGTTCTCCTCTACGCAGTCACCATAGCAGCCATCTTTAGTCTTTTGTTGCA
ATTTTATTTGAACCGACAAGTCGCCCACTATCAAGACTATGCTTTGAATAAAGAAAAATTGGTTGCTTTTGCTATGGCTA
AACGAACCAAAGATAAGGTTGAGCAAGAAAGTGGGGAACAGGTTTTTAATCTAGGTCAGGTAAGCTATCAAAACAAGAAA
ACTGGCTTAGTGACGAGGGTTCGTACGGATAAGAGCCAATATGAGTTTCTGTTTCCTTCAGTCAAAATCAAAGAAGAGAA
AAGAGATAAAAAGGAAGAGGTAGCGACCGATTCAAGCGAAAAAGTGGAGAAGAAAAAATCAGAAGAGAAGCCTGAAAAGA
AAGAGAATTTCTAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus pneumoniae D39

99.265

99.27

0.985

  comGG/cglG Streptococcus pneumoniae R6

99.265

99.27

0.985

  comGG/cglG Streptococcus pneumoniae TIGR4

99.265

99.27

0.985

  comGG/cglG Streptococcus pneumoniae Rx1

99.265

99.27

0.985

  comGG/cglG Streptococcus mitis NCTC 12261

89.051

100

0.891

  comGG/cglG Streptococcus mitis SK321

87.603

88.321

0.774

  comYG Streptococcus mutans UA140

38.806

97.81

0.38

  comYG Streptococcus mutans UA159

38.806

97.81

0.38


Multiple sequence alignment