Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   EL271_RS10140 Genome accession   NZ_AP018937
Coordinates   1853762..1854715 (-) Length   317 a.a.
NCBI ID   WP_000345099.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain HU-OH     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1848762..1859715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL271_RS10115 (SPOH_1879) - 1849523..1850146 (-) 624 WP_000932635.1 hypothetical protein -
  EL271_RS10120 (SPOH_1880) jag 1850197..1851183 (-) 987 WP_000260014.1 RNA-binding cell elongation regulator Jag/EloR -
  EL271_RS10125 (SPOH_1881) - 1851202..1852026 (-) 825 WP_001809383.1 membrane protein insertase YidC -
  EL271_RS10130 (SPOH_1882) rnpA 1852001..1852372 (-) 372 WP_000739244.1 ribonuclease P protein component -
  EL271_RS12015 - 1852389..1852520 (-) 132 WP_000768904.1 hypothetical protein -
  EL271_RS10135 (SPOH_1883) - 1852521..1853711 (-) 1191 WP_000167765.1 acetate kinase -
  EL271_RS10140 (SPOH_1884) comYH 1853762..1854715 (-) 954 WP_000345099.1 class I SAM-dependent methyltransferase Machinery gene
  EL271_RS10145 - 1854776..1855370 (-) 595 Protein_1869 class I SAM-dependent methyltransferase -
  EL271_RS10150 (SPOH_1887) comGG/cglG 1855507..1855920 (-) 414 WP_050295052.1 competence type IV pilus minor pilin ComGG Machinery gene
  EL271_RS10155 (SPOH_1888) comGF/cglF 1855898..1856359 (-) 462 WP_000250542.1 competence type IV pilus minor pilin ComGF Machinery gene
  EL271_RS10160 (SPOH_1889) comGE/cglE 1856322..1856624 (-) 303 WP_269471257.1 competence type IV pilus minor pilin ComGE Machinery gene
  EL271_RS10165 (SPOH_1890) comGD/cglD 1856587..1856991 (-) 405 WP_000588013.1 competence type IV pilus minor pilin ComGD Machinery gene
  EL271_RS10170 (SPOH_1891) comGC/cglC 1856984..1857310 (-) 327 WP_000738636.1 comG operon protein ComGC Machinery gene
  EL271_RS10175 (SPOH_1892) comGB/cglB 1857312..1858328 (-) 1017 WP_074017570.1 competence type IV pilus assembly protein ComGB Machinery gene
  EL271_RS10180 (SPOH_1893) comGA/cglA/cilD 1858276..1859217 (-) 942 WP_000249552.1 competence type IV pilus ATPase ComGA Machinery gene
  EL271_RS10185 (SPOH_1894) - 1859293..1859658 (-) 366 WP_000286415.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35718.89 Da        Isoelectric Point: 4.2474

>NTDB_id=71897 EL271_RS10140 WP_000345099.1 1853762..1854715(-) (comYH) [Streptococcus pneumoniae strain HU-OH]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELEQVKDNNQTLKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLTKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKEWLKEEASLVAMISLPENLFANAKQSKTIFILQKKSEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=71897 EL271_RS10140 WP_000345099.1 1853762..1854715(-) (comYH) [Streptococcus pneumoniae strain HU-OH]
ATGGATTTTGAAAAAATTGAACAAGCTTATACCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAACAGCATCTATCTGGATGGTGAGACTGAGCTAGAACAGGTCAAAGACAACAATC
AGACCCTTAAGCGTTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACACCGGATGCTATTGCTTTACTTTTGGTGTTTATTGTGGAAGAGCTGTTTAA
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTTTGGGCGCTACTTTCTTGACCTCGCTTACTAAAA
AGGTGGATTATTTGGGAATGGAAGTGGATGATTTGCTGATTGATCTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGCGATGTGGTCATCAGTGACTTGCCTGTTGG
CTATTATCCTGATGATGCCGTTGCGTCGCGCCATCAAGTTGCTTCTAGCCAAGAACATACTTACGCCCATCACTTGCTCA
TGGAACAAGGGCTTAAGTACCTCAAGTCAGACGGATACGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTGATTTGTTAAAAGAATGGCTGAAAGAAGAGGCGAGTCTGGTTGCTATGATTAGTCTGCCTGAAAATCTCTTTGCTAA
TGCTAAACAATCTAAGACTATTTTTATCCTACAGAAGAAAAGTGAAATAGCAGTGGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

54.952

98.738

0.543
  comYH Streptococcus mutans UA159

54.633

98.738

0.539

Multiple sequence alignment