Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PTC89_RS13960 Genome accession   NZ_CP117728
Coordinates   2913963..2914079 (-) Length   38 a.a.
NCBI ID   WP_001992235.1    Uniprot ID   A0A7U4DG74
Organism   Acinetobacter baumannii strain 2022CK-00783     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2908963..2919079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PTC89_RS13940 (PTC89_13940) - 2909531..2910736 (-) 1206 WP_002000389.1 hypothetical protein -
  PTC89_RS13945 (PTC89_13945) - 2910739..2911785 (-) 1047 WP_000027064.1 nucleoid-associated protein -
  PTC89_RS13950 (PTC89_13950) ssb 2912215..2912316 (-) 102 WP_168713084.1 single-stranded DNA-binding protein Machinery gene
  PTC89_RS13955 (PTC89_13955) - 2912298..2913740 (-) 1443 WP_000003535.1 hypothetical protein -
  PTC89_RS13960 (PTC89_13960) ssb 2913963..2914079 (-) 117 WP_001992235.1 single-stranded DNA-binding protein Machinery gene
  PTC89_RS13965 (PTC89_13965) - 2914413..2916878 (-) 2466 WP_001022397.1 DUF927 domain-containing protein -
  PTC89_RS13970 (PTC89_13970) - 2916891..2917169 (-) 279 WP_001064707.1 hypothetical protein -
  PTC89_RS13975 (PTC89_13975) - 2917291..2917596 (-) 306 WP_000787149.1 hypothetical protein -
  PTC89_RS13980 (PTC89_13980) - 2917606..2917974 (-) 369 WP_001046481.1 hypothetical protein -
  PTC89_RS13985 (PTC89_13985) - 2917967..2918521 (-) 555 WP_001988245.1 BRO-N domain-containing protein -
  PTC89_RS13990 (PTC89_13990) - 2918518..2918727 (-) 210 WP_001016479.1 helix-turn-helix domain-containing protein -
  PTC89_RS13995 (PTC89_13995) - 2918730..2918945 (-) 216 WP_000153154.1 hypothetical protein -

Sequence

Protein


Download         Length: 38 a.a.        Molecular weight: 4015.61 Da        Isoelectric Point: 5.9861

>NTDB_id=718869 PTC89_RS13960 WP_001992235.1 2913963..2914079(-) (ssb) [Acinetobacter baumannii strain 2022CK-00783]
MPNVNKVTVMGVLGLNPETKQFSNGGSVTIFSVATTEF

Nucleotide


Download         Length: 117 bp        

>NTDB_id=718869 PTC89_RS13960 WP_001992235.1 2913963..2914079(-) (ssb) [Acinetobacter baumannii strain 2022CK-00783]
ATGCCAAACGTAAATAAAGTTACTGTCATGGGTGTGTTAGGTCTTAACCCTGAAACTAAACAATTTTCCAACGGTGGCAG
CGTTACGATATTCAGCGTTGCAACTACTGAGTTTTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U4DG74

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

45.946

97.368

0.447
  ssb Neisseria gonorrhoeae MS11

48.571

92.105

0.447
  ssb Neisseria meningitidis MC58

48.571

92.105

0.447
  ssb Vibrio cholerae strain A1552

44.118

89.474

0.395